Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4e10
         (764 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48178-4|CAA88202.1|  521|Caenorhabditis elegans Hypothetical pr...    42   5e-04
U23527-5|AAC46572.2|  915|Caenorhabditis elegans Hypothetical pr...    32   0.39 
Z92790-3|CAB07228.1|  383|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z83218-2|CAB05687.1|  705|Caenorhabditis elegans Hypothetical pr...    29   4.8  
U40947-5|AAC48070.1|  505|Caenorhabditis elegans Inward rectifyi...    28   6.3  
AF106582-1|AAC78217.3| 1424|Caenorhabditis elegans Hypothetical ...    28   6.3  
Z82073-2|CAB04925.1|  358|Caenorhabditis elegans Hypothetical pr...    28   8.4  

>Z48178-4|CAA88202.1|  521|Caenorhabditis elegans Hypothetical
           protein C05C10.3 protein.
          Length = 521

 Score = 41.9 bits (94), Expect = 5e-04
 Identities = 17/42 (40%), Positives = 28/42 (66%)
 Frame = +1

Query: 4   VFEVDKEKGLILTELAEGVKVEDIVASTGCEFNVAQKIKTMG 129
           VF+VD + GL L E+ + + V+DI   T C+F +++ +K MG
Sbjct: 473 VFDVDTKNGLTLIEVRKDLTVDDIKKLTACKFEISENLKPMG 514


>U23527-5|AAC46572.2|  915|Caenorhabditis elegans Hypothetical
           protein K09E2.1 protein.
          Length = 915

 Score = 32.3 bits (70), Expect = 0.39
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = -1

Query: 134 TSPIV--FIFCATLNSQPVLATISSTLTPSANSVNIRPFSLSTSKT 3
           TSP    F+F   +  +PV +T+ ST + + +S   +P +LST+ T
Sbjct: 534 TSPFATRFVFSTRVTFRPVSSTVVSTKSSTTSSTTTKPTTLSTTTT 579


>Z92790-3|CAB07228.1|  383|Caenorhabditis elegans Hypothetical
           protein H03G16.4 protein.
          Length = 383

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -3

Query: 159 FCDCFGSGDVTHRFYFLCYVKLATSA 82
           FC+ FGS + T+R +++ Y K+  S+
Sbjct: 43  FCEEFGSSEKTYREFYVAYYKIGKSS 68


>Z83218-2|CAB05687.1|  705|Caenorhabditis elegans Hypothetical
           protein C31A11.5 protein.
          Length = 705

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = -3

Query: 189 YLLFVVITFLFCDCFGSGDVTHRFYFLCYVK 97
           Y+LF     L  D FG+GD TH FY + Y+K
Sbjct: 458 YILFSTYD-LPADFFGNGDATH-FYDMIYIK 486


>U40947-5|AAC48070.1|  505|Caenorhabditis elegans Inward rectifying
           k (potassium)channel family protein 1 protein.
          Length = 505

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/24 (45%), Positives = 19/24 (79%)
 Frame = -1

Query: 731 STSPLYRKSTEHLNRNLTILKSGL 660
           ++SPLYRKST+ L ++  + K+G+
Sbjct: 59  NSSPLYRKSTKKLKKSRLVGKNGI 82


>AF106582-1|AAC78217.3| 1424|Caenorhabditis elegans Hypothetical
           protein W05F2.7 protein.
          Length = 1424

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
 Frame = -1

Query: 140 LVTSPIVFIFC----ATLNSQPVLATISSTLTPSANSVN 36
           +VT P++FI      +T+ + P   TISST TP+A   +
Sbjct: 784 MVTGPLIFIIPTVIPSTMPTTPEPPTISSTFTPAATQAS 822


>Z82073-2|CAB04925.1|  358|Caenorhabditis elegans Hypothetical
           protein W06D12.4 protein.
          Length = 358

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 336 DIYGLRTSLIFTAFFAFTRYKINKNDMI 419
           +IYG   ++IF   F F  + I KND I
Sbjct: 100 EIYGFFLAVIFAVHFIFRYWTITKNDKI 127


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,358,782
Number of Sequences: 27780
Number of extensions: 330022
Number of successful extensions: 776
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)