Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4e10
         (764 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    23   4.1  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   5.4  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   5.4  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    22   7.2  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    22   7.2  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   7.2  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   9.5  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   9.5  

>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +2

Query: 455 ARDEKFFNERSSKTLTRN*SYLHVLNYVYYINIIS 559
           +++ K  +  S+KT+  N +Y +    +YY NII+
Sbjct: 309 SKESKIISSLSNKTIHNNNNYKNYNKKLYY-NIIN 342


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +3

Query: 612 KTNKYFLKRFKIELLVKPRFKYCKVSVEMLC 704
           KTN       K++LL K  F Y  + + + C
Sbjct: 222 KTNTGEYSCLKVDLLFKREFSYYLIQIYIPC 252


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +3

Query: 612 KTNKYFLKRFKIELLVKPRFKYCKVSVEMLC 704
           KTN       K++LL K  F Y  + + + C
Sbjct: 222 KTNTGEYSCLKVDLLFKREFSYYLIQIYIPC 252


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +2

Query: 455 ARDEKFFNERSSKTLTRN*SYLHVLNYVYYINI 553
           +++ K  +  S+KT+  N +Y +  N   Y NI
Sbjct: 298 SKEPKIISSLSNKTIHNNNNYNNYNNKKLYYNI 330



 Score = 21.4 bits (43), Expect = 9.5
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -3

Query: 243 NNKIKNGYTIKNIFDNVSYL 184
           NN   N Y  K ++ N++Y+
Sbjct: 314 NNNNYNNYNNKKLYYNINYI 333


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 216 IKNIFDNVSYLLFVVITFLFCD 151
           I NIF N+S +    ITF + D
Sbjct: 412 INNIFKNMSQIEREAITFQYTD 433


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 216 IKNIFDNVSYLLFVVITFLFCD 151
           I NIF N+S +    ITF + D
Sbjct: 412 INNIFKNMSQIEREAITFQYTD 433


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = -2

Query: 475 KKFFVSCYKIYFLNSVCK 422
           + FF++ + + FL + CK
Sbjct: 380 RNFFITMFDLDFLTNACK 397


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -1

Query: 209 IFLITFHICYLL*LHFYSVIVSGLV 135
           IF  ++ I  +L +++YS IVS +V
Sbjct: 215 IFTFSYCIPMILIIYYYSQIVSHVV 239


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,601
Number of Sequences: 438
Number of extensions: 4350
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)