Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4e10
         (764 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g27395.1 68415.m03308 cysteine protease-related contains simi...    29   3.4  
At3g50590.1 68416.m05533 transducin family protein / WD-40 repea...    29   4.5  
At4g24010.1 68417.m03450 cellulose synthase family protein simil...    28   5.9  
At3g21250.1 68416.m02685 ABC transporter family protein similar ...    28   7.8  

>At2g27395.1 68415.m03308 cysteine protease-related contains
           similarity to senescence-specific cysteine protease
           GI:5823018 from [Brassica napus]
          Length = 86

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 284 CKISHRYWNLMICWGLNGYLRFKDVLD 364
           C+   +YW +   WG NG++R K  +D
Sbjct: 51  CEEGTKYWMVKNSWGENGFMRIKRDVD 77


>At3g50590.1 68416.m05533 transducin family protein / WD-40 repeat
            family protein contains 3 WD-40 repeats (PF00400); some
            similarity to s-tomosyn isoform (GI:4689231)[Rattus
            norvegicus]; contains non-consensus AT-AC splice sites at
            intron 18
          Length = 1606

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = -1

Query: 95   SQPVLATISSTLTPSANSVNIRPFSLST 12
            SQP  +T+++T  PS+ S  + PF++S+
Sbjct: 1198 SQPSSSTVATTTAPSSASAPVDPFAMSS 1225


>At4g24010.1 68417.m03450 cellulose synthase family protein similar
           to Zea mays cellulose synthase-5 [gi:9622882], -4
           [gi:9622880]
          Length = 770

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 21/58 (36%), Positives = 30/58 (51%)
 Frame = -1

Query: 230 RMAIQLKIFLITFHICYLL*LHFYSVIVSGLVTSPIVFIFCATLNSQPVLATISSTLT 57
           R  I  +I+ I FH C ++ L ++ V    LVT+    I C  L S  VLA + +T T
Sbjct: 21  RRTIPYRIYAI-FHTCGIIALMYHHV--HSLVTANNTLITCLLLLSDIVLAFMWATTT 75


>At3g21250.1 68416.m02685 ABC transporter family protein similar to
           MRP-like ABC transporter GB:AAC49791 from [Arabidopsis
           thaliana]
          Length = 1294

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
 Frame = -1

Query: 149 VSGLVTSPIVFIFCATLNSQPVLA----TISSTLTPSANSVNIRPFSLS 15
           +S  + S +VF+ CA L S P+ A    T+ +TL   +  V I P ++S
Sbjct: 353 MSPTIVSSVVFLGCALLKSAPLNASTIFTVLATLRVMSEPVKIIPDAIS 401


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,784,864
Number of Sequences: 28952
Number of extensions: 279208
Number of successful extensions: 575
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1712086600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)