Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4e09
         (387 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   5.5  
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo...    24   7.2  
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch...    24   9.6  

>SPAC664.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 117

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = -3

Query: 322 ILKNXFSGFRCFRGLQIFIKFVEAVYHRAKVFLNSLRGQGGFNFFPQFLN 173
           +  N F+    ++ ++  +   EAV  R +  + SLR Q   NFF Q L+
Sbjct: 55  VQSNEFTESEDYKSIERSLAVTEAVMARFEKEMGSLRDQ--MNFFHQILD 102


>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
           Swi2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +1

Query: 334 TPNISNVIMFSTLLNKS 384
           TPN SNV + ++L+N+S
Sbjct: 515 TPNYSNVCLSTSLINRS 531


>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 815

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
 Frame = +2

Query: 161 AKXTIEEL-REKVEXALAP--ETVKKNFGXMVDSFNEFYKNLKPAEAPKAXE 307
           A+ +IE L  E V   L P  + ++++   +++S  + YK + P +AP+  E
Sbjct: 593 ARESIEALAHECVTRRLLPLIDKMRESLMKILESNADGYKQMSPTKAPQVFE 644


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,228,176
Number of Sequences: 5004
Number of extensions: 18021
Number of successful extensions: 44
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)