Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4e09
         (387 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00052-7|AAK21422.2|  232|Caenorhabditis elegans Fatty acid/reti...    28   2.6  
Z67995-6|CAA91946.1| 2692|Caenorhabditis elegans Hypothetical pr...    27   3.5  
Z67737-7|CAA91543.1| 2692|Caenorhabditis elegans Hypothetical pr...    27   3.5  

>U00052-7|AAK21422.2|  232|Caenorhabditis elegans Fatty acid/retinol
           binding proteinprotein 8 protein.
          Length = 232

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = +2

Query: 134 NSLNTLAESAKXTIEELRE--KVEXALAPETVKKNFGXMVDSFNEFYKNLKPAEAPKAXE 307
           N+  +    AK  +++  E  K+E A  PE VK       ++++    NLKP +  K  E
Sbjct: 156 NNAKSAVSGAKALLQDDSEAAKIEEAF-PEAVKLLNSKKFEAYSIIVNNLKPLDCVKDRE 214

Query: 308 VIF 316
            +F
Sbjct: 215 QVF 217


>Z67995-6|CAA91946.1| 2692|Caenorhabditis elegans Hypothetical
           protein T01H10.8 protein.
          Length = 2692

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 16/57 (28%), Positives = 25/57 (43%)
 Frame = +2

Query: 128 EXNSLNTLAESAKXTIEELREKVEXALAPETVKKNFGXMVDSFNEFYKNLKPAEAPK 298
           E +S   L    K TI   +      L  +  K  FG ++D FN  + NL+ ++  K
Sbjct: 125 EEDSQILLLRLLKTTISS-KSNYHHRLVLDECKVGFGMLIDDFNNGFNNLEKSDVRK 180


>Z67737-7|CAA91543.1| 2692|Caenorhabditis elegans Hypothetical
           protein T01H10.8 protein.
          Length = 2692

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 16/57 (28%), Positives = 25/57 (43%)
 Frame = +2

Query: 128 EXNSLNTLAESAKXTIEELREKVEXALAPETVKKNFGXMVDSFNEFYKNLKPAEAPK 298
           E +S   L    K TI   +      L  +  K  FG ++D FN  + NL+ ++  K
Sbjct: 125 EEDSQILLLRLLKTTISS-KSNYHHRLVLDECKVGFGMLIDDFNNGFNNLEKSDVRK 180


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,641,864
Number of Sequences: 27780
Number of extensions: 99282
Number of successful extensions: 213
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 576961812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)