Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4e09
         (387 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   2.8  
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    21   6.5  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    21   6.5  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    20   8.6  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
 Frame = -2

Query: 380 LFNNVENII--TFDIFGVMXLDTKKXLLXLSVLPRASDFYKIR 258
           LF+NV        D +    LDTKK    +S L   +D Y ++
Sbjct: 359 LFSNVTPKFPRNIDEYNNNDLDTKKWNNKISALRALNDLYNVK 401


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = -3

Query: 370 MSRTLLHSIYLGLCX*ILKNXFSGFRCFRGL 278
           MSR +L S  L     +L   F GF  F GL
Sbjct: 1   MSRLVLASFLLLAVFSMLVGGFGGFGGFGGL 31


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = -3

Query: 370 MSRTLLHSIYLGLCX*ILKNXFSGFRCFRGL 278
           MSR +L S  L     +L   F GF  F GL
Sbjct: 1   MSRLVLASFLLLAIFSMLVGGFGGFGGFGGL 31


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = -2

Query: 194 LFPSIPQLXSSHSQPAYLG 138
           + P  P+L   H  P +LG
Sbjct: 9   ILPLNPKLYDKHRAPKFLG 27


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,956
Number of Sequences: 438
Number of extensions: 1173
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9391092
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)