Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4e08
         (627 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47473| Best HMM Match : LRR_1 (HMM E-Value=2.8e-10)                 32   0.33 
SB_27790| Best HMM Match : UPAR_LY6 (HMM E-Value=0.22)                 31   1.0  
SB_39371| Best HMM Match : Lectin_C (HMM E-Value=1.4e-06)              29   4.1  
SB_32428| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_28036| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_1457| Best HMM Match : VHS (HMM E-Value=2e-31)                      27   9.4  

>SB_47473| Best HMM Match : LRR_1 (HMM E-Value=2.8e-10)
          Length = 658

 Score = 32.3 bits (70), Expect = 0.33
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = +1

Query: 385 LAKKYSVEQPAFADELDSIDANNLKCTSYKLNKLNNDRLLFSDI 516
           L K Y ++ P +++E+ +I+  NLK  SY + K ++ R    D+
Sbjct: 257 LVKNYVMKNPEYSNEITNIETKNLKQRSYLVGKRSHCRKTRHDV 300


>SB_27790| Best HMM Match : UPAR_LY6 (HMM E-Value=0.22)
          Length = 150

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = +1

Query: 115 NMSLHSTSRHFIPPAFGIEG--YARIGNPLTNPSVVEIKPKTTAGQNK 252
           N  L  T+   +P +   EG  YAR G P  +P +   KP +T+G ++
Sbjct: 80  NEGLAITTSTVVPSSASEEGDKYARAGKPSPSPVITAAKPTSTSGGSR 127


>SB_39371| Best HMM Match : Lectin_C (HMM E-Value=1.4e-06)
          Length = 490

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 428 SSANAGCSTLYFLARRIGISLRVFCMRI 345
           SS ++GC   Y   +R  +S RV C+RI
Sbjct: 131 SSGSSGCLRFYVTDKRTWVSARVECLRI 158


>SB_32428| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1128

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +1

Query: 148  IPPAFGIEG--YARIGNPLTNPSVVEIKPKTTAGQNK 252
            +P +   EG  YAR G P   P +  +KP  T+G ++
Sbjct: 1069 VPSSASEEGDKYARAGKPSPPPVITAVKPTLTSGGSR 1105


>SB_28036| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 489

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 428 SSANAGCSTLYFLARRIGISLRVFCMRI 345
           SS ++GC   Y   +R  +S RV C+RI
Sbjct: 131 SSGSSGCLRFYVNDKRTWVSARVECLRI 158


>SB_1457| Best HMM Match : VHS (HMM E-Value=2e-31)
          Length = 892

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
 Frame = +1

Query: 133 TSRHFIPPAFGIEGYARIGNPL-----TNPSVVEIKPK-TTAG--QNKYCLKYLYSELFA 288
           +S+  I P FGIE   R+ +P       N    + KP+ +T+G  +N+   +YL S LF 
Sbjct: 261 SSKESIIPQFGIEKEVRVCDPCYLKINPNSKTAQTKPEPSTSGGAENELPPEYLNSPLFK 320

Query: 289 TAIEDAIIAYRILAESNSE 345
            + E      R L E   E
Sbjct: 321 ESQEPPKKNERDLQEQEEE 339


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,066,560
Number of Sequences: 59808
Number of extensions: 303278
Number of successful extensions: 590
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 590
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)