Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4e08
         (627 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g14980.1 68416.m01894 PHD finger transcription factor, putati...    33   0.16 
At5g57200.1 68418.m07145 epsin N-terminal homology (ENTH) domain...    29   2.5  
At4g25940.1 68417.m03731 epsin N-terminal homology (ENTH) domain...    27   7.7  
At2g12520.1 68415.m01354 hypothetical protein low similarity to ...    27   7.7  

>At3g14980.1 68416.m01894 PHD finger transcription factor, putative
           contains Pfam profile: PF00628 PHD-finger
          Length = 1189

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 20/66 (30%), Positives = 37/66 (56%)
 Frame = +1

Query: 307 IIAYRILAESNSEMRIQKTLSDMPILLAKKYSVEQPAFADELDSIDANNLKCTSYKLNKL 486
           I+A +++AE   E  ++K L       +KK S  +PA  D+ DS+D+N+L    ++  ++
Sbjct: 458 IVASKLIAEDMHESVMRKNLHRR----SKKISDIKPASLDQHDSLDSNSLNSFEFQDKEM 513

Query: 487 NNDRLL 504
            N  L+
Sbjct: 514 GNIHLV 519


>At5g57200.1 68418.m07145 epsin N-terminal homology (ENTH)
           domain-containing protein / clathrin assembly
           protein-related low similarity to clathrin assembly
           protein AP180 [Xenopus laevis] GI:6492344; contains Pfam
           profile PF01417: ENTH domain
          Length = 591

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 25/105 (23%), Positives = 48/105 (45%)
 Frame = +1

Query: 283 FATAIEDAIIAYRILAESNSEMRIQKTLSDMPILLAKKYSVEQPAFADELDSIDANNLKC 462
           +A  +E+ +  YR+L       R+ K         +K +     +  D L+ + A  L+ 
Sbjct: 143 YALFLEERLECYRVLKYDIEAERLPKASG----AASKTHRTRMLSGEDLLEQLPA--LQQ 196

Query: 463 TSYKLNKLNNDRLLFSDILIATYLGLSLLENWKVLTDRNNGLISI 597
             Y+L     +   +S+ LI   L L L E++K+    N+G+I++
Sbjct: 197 LLYRLIGCQPEGAAYSNYLIQYALALVLKESFKIYCAINDGIINL 241


>At4g25940.1 68417.m03731 epsin N-terminal homology (ENTH)
           domain-containing protein contains Pfam PF01417: ENTH
           domain. ENTH (Epsin N-terminal homology) domain; similar
           to  Chain B, Crystal Structure Of N-Terminal Domain Of
           Drosophila Ap180 (GP:13399617) [Drosophila
           melanogaster]; supporting cDNA
           gi|20465326|gb|AY096427.1|
          Length = 601

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 24/109 (22%), Positives = 51/109 (46%), Gaps = 4/109 (3%)
 Frame = +1

Query: 283 FATAIEDAIIAYRILAESNSEMRIQK----TLSDMPILLAKKYSVEQPAFADELDSIDAN 450
           +A  +E+ +  YR+L       R+ K    +  ++    ++ Y     +  + L+ + A 
Sbjct: 143 YALFLEERLECYRVLKYDIEAERLPKGSGASSKNVDFNASQTYRTRMLSDEELLEQLPA- 201

Query: 451 NLKCTSYKLNKLNNDRLLFSDILIATYLGLSLLENWKVLTDRNNGLISI 597
            L+   Y+L     +   +S+ LI   L L L E++K+    N+G+I++
Sbjct: 202 -LQQLLYRLIGCQPEGSAYSNYLIQYALALVLKESFKIYCAINDGIINL 249


>At2g12520.1 68415.m01354 hypothetical protein low similarity to
           protective antigen [Streptococcus pyogenes] GI:8996050,
           paramyosin [Anisakis simplex] GI:8117843
          Length = 356

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
 Frame = +1

Query: 271 YSELFATAIEDAIIA---YRILAESNSEMRIQKTLSDMPILLAKKYSVEQPAFADELDSI 441
           YS L A  I++  +A   Y +L    +E+     L D     A   +VE+P    ELD +
Sbjct: 225 YSRLLA-GIKEKWVAKKEYTMLEGQAAEVESNLALIDQITKAAIDLTVERPRLQAELDDL 283

Query: 442 DAN--NLKCTSYKLNKLN 489
           +A+  + K + + L+KL+
Sbjct: 284 EAHCKSKKVSDFTLSKLD 301


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,361,741
Number of Sequences: 28952
Number of extensions: 213272
Number of successful extensions: 437
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)