Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte4e07
(319 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g11990.1 68418.m01402 proline-rich family protein contains pr... 32 0.096
At4g22470.1 68417.m03245 protease inhibitor/seed storage/lipid t... 31 0.22
At3g19430.1 68416.m02464 late embryogenesis abundant protein-rel... 29 0.67
At3g24480.1 68416.m03070 leucine-rich repeat family protein / ex... 28 1.6
At2g15880.1 68415.m01820 leucine-rich repeat family protein / ex... 27 2.7
At1g23540.1 68414.m02960 protein kinase family protein contains ... 27 2.7
At4g27110.1 68417.m03896 phytochelatin synthetase-related contai... 27 3.6
At3g19020.1 68416.m02415 leucine-rich repeat family protein / ex... 27 3.6
At5g50910.1 68418.m06312 hypothetical protein 26 4.8
At4g33970.1 68417.m04820 leucine-rich repeat family protein / ex... 26 4.8
At4g24690.1 68417.m03534 ubiquitin-associated (UBA)/TS-N domain-... 26 4.8
At1g49750.1 68414.m05579 leucine-rich repeat family protein cont... 26 4.8
At1g34245.1 68414.m04250 expressed protein 26 4.8
At5g09440.1 68418.m01093 phosphate-responsive protein, putative ... 26 6.3
At4g38770.1 68417.m05490 proline-rich family protein (PRP4) simi... 26 6.3
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex... 26 6.3
At5g10690.1 68418.m01237 pentatricopeptide (PPR) repeat-containi... 25 8.3
At4g13590.1 68417.m02116 expressed protein contains Pfam profile... 25 8.3
At4g11200.1 68417.m01813 hypothetical protein contains weak hit ... 25 8.3
At3g62850.1 68416.m07061 zinc finger protein-related contains Pf... 25 8.3
At2g38690.1 68415.m04751 hypothetical protein 25 8.3
At2g24530.1 68415.m02930 expressed protein ; expression supporte... 25 8.3
At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP1... 25 8.3
>At5g11990.1 68418.m01402 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 181
Score = 31.9 bits (69), Expect = 0.096
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Frame = +2
Query: 74 CPPVCSPPDCRP---ICGPASPLLCQSSVPP 157
CP +CSPP +P + P SP L SS PP
Sbjct: 38 CPTICSPPPSKPSPSMSPPPSPSLPLSSSPP 68
>At4g22470.1 68417.m03245 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to
hydroxyproline-rich glycoprotein DZ-HRGP from Volvox
carteri f. nagariensis GP|6523547; contains Pfam profile
PF00234 Protease inhibitor/seed storage/LTP family
Length = 375
Score = 30.7 bits (66), Expect = 0.22
Identities = 16/41 (39%), Positives = 17/41 (41%)
Frame = +2
Query: 71 YCPPVCSPPDCRPICGPASPLLCQSSVPPTQRCYPVNPCIN 193
YCPP PP C IC P P PPT + P N
Sbjct: 29 YCPP---PPPCICICNPGPPPPQPDPQPPTPPTFQPAPPAN 66
>At3g19430.1 68416.m02464 late embryogenesis abundant
protein-related / LEA protein-related similar to late
embryogenesis abundant protein [Picea glauca] GI:1350543
Length = 559
Score = 29.1 bits (62), Expect = 0.67
Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
Frame = +2
Query: 71 YCPPVCSPP--DCRPICGPASP 130
+CP C C+PICGP SP
Sbjct: 35 FCPDSCHVECASCKPICGPPSP 56
>At3g24480.1 68416.m03070 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 494
Score = 27.9 bits (59), Expect = 1.6
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = +2
Query: 77 PPVCSPPDCRPICGPASPLLCQSSVPPTQRCYPVNP 184
PPV SPP P+ P P S PP + +P
Sbjct: 431 PPVFSPPPSPPVYSPPPPPSIHYSSPPPPPVHHSSP 466
>At2g15880.1 68415.m01820 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 727
Score = 27.1 bits (57), Expect = 2.7
Identities = 17/42 (40%), Positives = 19/42 (45%)
Frame = +2
Query: 77 PPVCSPPDCRPICGPASPLLCQSSVPPTQRCYPVNPCINIYS 202
PPV SPP PI P P + S PP Y P +YS
Sbjct: 496 PPVHSPPPPSPIHSPPPPPV--YSPPPPPPVYSPPPPPPVYS 535
Score = 26.6 bits (56), Expect = 3.6
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +2
Query: 77 PPVCSPPDCRPICGPASPLLCQSSVPP 157
PPV SPP P+ P P S PP
Sbjct: 522 PPVYSPPPPPPVYSPPPPPPVHSPPPP 548
Score = 26.2 bits (55), Expect = 4.8
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +2
Query: 77 PPVCSPPDCRPICGPASPLLCQSSVPP 157
PPV SPP P+ P P S PP
Sbjct: 513 PPVYSPPPPPPVYSPPPPPPVYSPPPP 539
>At1g23540.1 68414.m02960 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 720
Score = 27.1 bits (57), Expect = 2.7
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = +2
Query: 77 PPVCSPPDCRPICGPASPLLCQSSVPPTQRCYPVNPCI 190
PPV S P P ++P L + S PP P P I
Sbjct: 33 PPVDSSPPSPPADSSSTPPLSEPSTPPPDSQLPPLPSI 70
>At4g27110.1 68417.m03896 phytochelatin synthetase-related contains
Pfam PF04833: Phytochelatin synthetase-like conserved
region
Length = 668
Score = 26.6 bits (56), Expect = 3.6
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -3
Query: 209 CNSCIC*CKDLQDSTVVLVAR 147
CN+C C CKD+ T AR
Sbjct: 438 CNTCACGCKDIDTDTCNANAR 458
>At3g19020.1 68416.m02415 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 956
Score = 26.6 bits (56), Expect = 3.6
Identities = 14/39 (35%), Positives = 16/39 (41%)
Frame = +2
Query: 77 PPVCSPPDCRPICGPASPLLCQSSVPPTQRCYPVNPCIN 193
PPV SPP PI P P+ P T +P N
Sbjct: 797 PPVHSPPPPSPIYSPPPPVFSPPPKPVTPLPPATSPMAN 835
Score = 25.4 bits (53), Expect = 8.3
Identities = 15/36 (41%), Positives = 16/36 (44%)
Frame = +2
Query: 77 PPVCSPPDCRPICGPASPLLCQSSVPPTQRCYPVNP 184
PPV SPP PI P P + S PP P P
Sbjct: 737 PPVFSPPPPAPIYSPPPPPV--HSPPPPVHSPPPPP 770
>At5g50910.1 68418.m06312 hypothetical protein
Length = 116
Score = 26.2 bits (55), Expect = 4.8
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +1
Query: 181 SLHQHIQLLHSNYV-TQWTISIVNLKMVRNTHLFCKMYS 294
S HI + + ++ QWT VNL + + H+F Y+
Sbjct: 3 SFSWHIIVSANGFILNQWTTHFVNLMHIISPHMFISKYT 41
>At4g33970.1 68417.m04820 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 699
Score = 26.2 bits (55), Expect = 4.8
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +2
Query: 77 PPVCSPPDCRPICGPASPLLCQSSVPPTQ 163
PPV SPP P+ P P+ S PP+Q
Sbjct: 607 PPVHSPPPPPPVYSPPPPVF---SPPPSQ 632
Score = 25.4 bits (53), Expect = 8.3
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +2
Query: 77 PPVCSPPDCRPICGPASPLLCQSSVPP 157
PPV SPP P+ P P+ PP
Sbjct: 591 PPVHSPPPPAPVHSPPPPVHSPPPPPP 617
>At4g24690.1 68417.m03534 ubiquitin-associated (UBA)/TS-N
domain-containing protein / octicosapeptide/Phox/Bemp1
(PB1) domain-containing protein contains Pfam profiles
PF00627: Ubiquitin-associated (UBA)/TS-N domain,
PF00569: Zinc finger ZZ type domain, PF00564: PB1 domain
Length = 704
Score = 26.2 bits (55), Expect = 4.8
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = -3
Query: 131 AEMQVHRSDDNPEVNRLVDNNPFFTFLIYRLVNLKNFTNISI 6
AE+ + SD++ +V LVD+N F RL LK N +
Sbjct: 52 AELSLTYSDEDGDVVALVDDNDLFDVTNQRLKFLKINVNAGV 93
>At1g49750.1 68414.m05579 leucine-rich repeat family protein
contains leucine-rich repeats, Pfam:PF00560
Length = 494
Score = 26.2 bits (55), Expect = 4.8
Identities = 14/37 (37%), Positives = 16/37 (43%)
Frame = +2
Query: 74 CPPVCSPPDCRPICGPASPLLCQSSVPPTQRCYPVNP 184
CPP SPP C P P P +PP + P P
Sbjct: 70 CPPPPSPPPCPPPPSP-PPSPPPPQLPPPPQLPPPAP 105
>At1g34245.1 68414.m04250 expressed protein
Length = 120
Score = 26.2 bits (55), Expect = 4.8
Identities = 17/48 (35%), Positives = 20/48 (41%)
Frame = +2
Query: 62 KMGYCPPVCSPPDCRPICGPASPLLCQSSVPPTQRCYPVNPCINIYSC 205
+M P S PDC CG SP C+ V + C C IY C
Sbjct: 63 EMEMYPTGSSLPDCSYACGACSP--CK-RVMISFECSVAESCSVIYRC 107
>At5g09440.1 68418.m01093 phosphate-responsive protein, putative
similar to phi-1 (phosphate-induced gene) [Nicotiana
tabacum] GI:3759184; contains Pfam profile PF04674:
Phosphate-induced protein 1 conserved region
Length = 278
Score = 25.8 bits (54), Expect = 6.3
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 74 CPPVCSPPDCRPICGPASPLL 136
CP C+ P +PI GP SP L
Sbjct: 170 CPGYCAWPFHQPIYGPQSPPL 190
>At4g38770.1 68417.m05490 proline-rich family protein (PRP4) similar
to proline-rich protein [Arabidopsis thaliana]
gi|6782442|gb|AAF28388; contains proline-rich extensin
domains, INTERPRO:IPR002965
Length = 448
Score = 25.8 bits (54), Expect = 6.3
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = +2
Query: 77 PPVCSPPDCRPICGPASPLLCQSSVPPTQRCYPVNP 184
PP+ PP + C P P+ V P + C P P
Sbjct: 364 PPIYIPPIVKKPCPPPVPIYKPPVVIPKKPCPPPVP 399
>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 760
Score = 25.8 bits (54), Expect = 6.3
Identities = 14/36 (38%), Positives = 14/36 (38%)
Frame = +2
Query: 77 PPVCSPPDCRPICGPASPLLCQSSVPPTQRCYPVNP 184
PP PP P P P SS PPT P P
Sbjct: 577 PPHSPPPPIYPYLSPPPPPTPVSSPPPTPVYSPPPP 612
>At5g10690.1 68418.m01237 pentatricopeptide (PPR) repeat-containing
protein / CBS domain-containing protein contains CBS and
PPR domain repeats
Length = 580
Score = 25.4 bits (53), Expect = 8.3
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +2
Query: 128 PLLCQSSVPPTQRCYP 175
PLL S PT+RCYP
Sbjct: 15 PLLPSCSFVPTRRCYP 30
>At4g13590.1 68417.m02116 expressed protein contains Pfam profile
PF01169: Uncharacterized protein family UPF0016
Length = 359
Score = 25.4 bits (53), Expect = 8.3
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -2
Query: 135 RSGDAGPQIGRQSGGEQTGGQ 73
R+ DAG G SGGE+ G Q
Sbjct: 66 RASDAGVGSGSYSGGEEDGSQ 86
>At4g11200.1 68417.m01813 hypothetical protein contains weak hit to
Pfam profile PF03108: MuDR family transposase
Length = 462
Score = 25.4 bits (53), Expect = 8.3
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -3
Query: 158 LVARCSGKGAEMQVHRSDDNP 96
L RC+GKG E +++ + +NP
Sbjct: 381 LGVRCNGKGCEWRIYCAMENP 401
>At3g62850.1 68416.m07061 zinc finger protein-related contains Pfam
profiles PF04396: Protein of unknown function DUF537,
weak hit to PF00096: Zinc finger, C2H2 type
Length = 472
Score = 25.4 bits (53), Expect = 8.3
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = -3
Query: 215 FECNSCIC*CKDLQD 171
F C C+C CK L+D
Sbjct: 436 FSCMLCLCDCKSLED 450
>At2g38690.1 68415.m04751 hypothetical protein
Length = 236
Score = 25.4 bits (53), Expect = 8.3
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +2
Query: 29 LNLQVYKLKK*KMGYCPP--VCSPPDCRPICGPASPLLCQSSVPPTQRCYPVNP 184
++L + +L Y PP + S + P ASP+ +S +P ++ P NP
Sbjct: 17 IDLSLLRLTSPPYDYSPPSSLFSADEITPPLKRASPVSDESDLPKRRKLSPQNP 70
>At2g24530.1 68415.m02930 expressed protein ; expression supported
by MPSS
Length = 252
Score = 25.4 bits (53), Expect = 8.3
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = +2
Query: 107 PICGPASPLLCQSSVPPTQRCYPVNPCINIYSCY 208
P+ P C +SV + R PV+ + SCY
Sbjct: 75 PLIAPLGIPFCSASVGGSPRTIPVSTNAELISCY 108
>At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP19)
non-consensus splice site at the intron:exon boundary
(AT:exon)
Length = 247
Score = 25.4 bits (53), Expect = 8.3
Identities = 13/35 (37%), Positives = 14/35 (40%)
Frame = +2
Query: 80 PVCSPPDCRPICGPASPLLCQSSVPPTQRCYPVNP 184
P SPP P P SP +S PP P P
Sbjct: 109 PTVSPPPVSPPPAPTSPPPTPASPPPAPASPPPAP 143
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,755,854
Number of Sequences: 28952
Number of extensions: 139865
Number of successful extensions: 448
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 445
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 340508912
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -