Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4e06
         (317 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    41   4e-05
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ...    25   3.7  
SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27 family|Schi...    23   8.5  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 41.1 bits (92), Expect = 4e-05
 Identities = 17/26 (65%), Positives = 21/26 (80%)
 Frame = -3

Query: 78  N*LVPLILGAPDXAFPRINNIRFXLL 1
           N LVPL++GAPD A+PR+NN  F LL
Sbjct: 87  NYLVPLMIGAPDVAYPRVNNFTFWLL 112



 Score = 35.9 bits (79), Expect = 0.001
 Identities = 22/57 (38%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = -1

Query: 296 IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXRAELGNPGS--LIGDDQIYNTIVTAH 132
           I+STN KDI  LY                  R EL  PGS  L G+ Q+YN  ++AH
Sbjct: 12  IFSTNAKDIAILYLLFGLVSGIIGSVFSFIIRMELSAPGSQFLSGNGQLYNVAISAH 68


>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 782

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +2

Query: 185 DFLIQLELKVLKMFQL 232
           DFLIQL+ KV   FQL
Sbjct: 609 DFLIQLKSKVFNRFQL 624


>SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -2

Query: 106 YTYYNWRIWK 77
           Y Y NWRIW+
Sbjct: 620 YMYDNWRIWE 629


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,055,744
Number of Sequences: 5004
Number of extensions: 16438
Number of successful extensions: 27
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 85983492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)