Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4e06
         (317 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g63780.1 68418.m08005 zinc finger (C3HC4-type RING finger) fa...    31   0.17 
At5g08750.1 68418.m01039 zinc finger (C3HC4-type RING finger) fa...    31   0.17 

>At5g63780.1 68418.m08005 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 367

 Score = 31.1 bits (67), Expect = 0.17
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 312 FLAKMNLFYKS*RYWNIIFYFWYLIRNNW 226
           F+    + Y   RYW I+F FW+L+   W
Sbjct: 328 FVVLTRIRYGPARYWAILFIFWFLVFGIW 356


>At5g08750.1 68418.m01039 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 363

 Score = 31.1 bits (67), Expect = 0.17
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 312 FLAKMNLFYKS*RYWNIIFYFWYLIRNNW 226
           F+    + Y   RYW I+F FW+L+   W
Sbjct: 324 FVVLTRIRYGPARYWAILFVFWFLVFGIW 352


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,108,489
Number of Sequences: 28952
Number of extensions: 76196
Number of successful extensions: 128
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 340508912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)