Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4e05
         (669 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual      27   3.2  
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    27   3.2  
SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|S...    26   4.3  
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca...    25   7.5  
SPBC27B12.12c |||CorA family magnesium ion transporter |Schizosa...    25   9.9  

>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 19/60 (31%), Positives = 27/60 (45%)
 Frame = +3

Query: 402 AHQSKHAARNDNSGSTRQSAFGYCGPRSFDEVPEEPAASDPYHDLLVPVALLC*LRQEAL 581
           A  +KHAA+N  S   R+++       S D V    A SD    L +   LL   ++E L
Sbjct: 189 AKSTKHAAKNSPSKKKRKTSVATAEDASTDSVSSSIAISDASLSLSLMKDLLSLQKREDL 248


>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +3

Query: 429 NDNSGSTRQSAFGYCGPRSFDEVPEE-PAASDP 524
           NDN   TR+S++      +F++ PEE P AS+P
Sbjct: 252 NDNDSQTRRSSWSSIA-SAFNDFPEEFPNASNP 283


>SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter
           Atm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 693

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 569 SGSIIVRDSICHIWSSGK*SCKTAPAGAL 655
           +G +IV+D + +IW  GK + K     AL
Sbjct: 95  TGQMIVKDMLQYIWPKGKTNLKVRVVSAL 123


>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
           catalytic subunit Arm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 811

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 9/11 (81%), Positives = 11/11 (100%)
 Frame = +3

Query: 120 VRNGDYENSTF 152
           V+NGDYENS+F
Sbjct: 667 VKNGDYENSSF 677


>SPBC27B12.12c |||CorA family magnesium ion transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 803

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +1

Query: 334 YNELEATIFTAGDHAHISALEKTLISPSMLLEMTTAGLLGSQHSD 468
           YNE   +  T G H H+S   K+  S S L  +++  +    +SD
Sbjct: 196 YNEGRGSFDTLGTHYHLSKSRKSSSSDS-LYSVSSMSIKNDSNSD 239


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,684,495
Number of Sequences: 5004
Number of extensions: 54253
Number of successful extensions: 143
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)