Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4e05
         (669 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54838| Best HMM Match : Vitellogenin_N (HMM E-Value=4.76441e-44)    31   0.64 
SB_58637| Best HMM Match : Cecropin (HMM E-Value=2.6)                  29   3.4  
SB_54444| Best HMM Match : zf-CCHC (HMM E-Value=0.035)                 29   3.4  
SB_39739| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)             29   3.4  
SB_24811| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_5064| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.0  
SB_56647| Best HMM Match : rve (HMM E-Value=1.5e-10)                   28   6.0  
SB_41986| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  

>SB_54838| Best HMM Match : Vitellogenin_N (HMM E-Value=4.76441e-44)
          Length = 2581

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 20/83 (24%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
 Frame = -2

Query: 353  VASSSLYRNRAAALAKTTVGPTPHTSPLQLNHFAIVSK*ESQISQCAEKLTDLPAIHKAD 174
            V+ +++++N  A +AK  +    +     ++H  +  K   ++S   E L  +P IH  D
Sbjct: 2342 VSITNIFKNDEAEMAKNII--VEYLPGKSMSHQIVWYKPGKKVSASMEILPRIPLIHSLD 2399

Query: 173  FSHEH----LHKCTIFIVSIAHH 117
            ++HE      H  ++F  SI ++
Sbjct: 2400 WNHEEGLFVRHTASVFGKSIVNY 2422


>SB_58637| Best HMM Match : Cecropin (HMM E-Value=2.6)
          Length = 155

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 17/70 (24%), Positives = 33/70 (47%)
 Frame = -1

Query: 429 FEQHAWTDERLLQRRDVSVVSGREYSRLELVVQKQGRGTREDHRGPDPPHVAVATQPFRY 250
           F++     E + ++++ SV +   Y  ++L    + R  +  H G   P +A   + FR 
Sbjct: 34  FKEFDRLSETVFRKQEASVANKDRYKIVDLWPAIE-RSIKRTHDGIHRPIIAALAEKFRE 92

Query: 249 RFQVRVTNIT 220
           +F+V  T  T
Sbjct: 93  KFEVMKTGTT 102


>SB_54444| Best HMM Match : zf-CCHC (HMM E-Value=0.035)
          Length = 671

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 345 ELVVQKQGRGTREDHRGPDPPHVAVATQP 259
           +L +Q+Q  G+R +   P PP   VAT P
Sbjct: 192 QLPLQEQSSGSRAEEASPPPPPALVATGP 220


>SB_39739| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
          Length = 1120

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -3

Query: 475 PQYPNADCRVDPLLSFRAACLD 410
           P YP+A CRV+P    RA  LD
Sbjct: 270 PAYPDAGCRVNPCAGCRAEFLD 291


>SB_24811| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 619

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 514 PQIHITICWFLSLCYADYVRKHYC 585
           P + IT+C  LS+CY   +   YC
Sbjct: 164 PLLSITVCPLLSVCYCPLLSVRYC 187


>SB_5064| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 711

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -2

Query: 260 HFAIVSK*ESQISQCAEKLTDLPAIHKADFSHEHLHKCTI 141
           H ++  K   +  QC +    +PA+     +H+ LHKC I
Sbjct: 585 HRSLDGKLAKRCHQCGKAYVSMPALAMHVLTHKLLHKCEI 624


>SB_56647| Best HMM Match : rve (HMM E-Value=1.5e-10)
          Length = 1347

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = -1

Query: 411 TDERLLQRRDVSVVSGREYSRLELVVQKQGRGTREDHRGPDPPHV 277
           TD+  +    + +V+ R+   LE+     G G    HRG DP ++
Sbjct: 364 TDDSAIHGGGLRLVNTRDGVHLEITRTASGTGAVNGHRGMDPKNI 408


>SB_41986| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 456

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/29 (48%), Positives = 15/29 (51%)
 Frame = +3

Query: 291 RAHGGLRECRGPVSVQRARGDYIHGRRPR 377
           R  G  RE RGP   QR  GD  + R PR
Sbjct: 292 RTFGNPREPRGPSGTQRTLGDPENPREPR 320


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,720,989
Number of Sequences: 59808
Number of extensions: 433564
Number of successful extensions: 1051
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1049
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)