Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4e05
         (669 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK130577-1|BAC85385.1|  478|Homo sapiens protein ( Homo sapiens ...    33   0.92 
AB209560-1|BAD92797.1| 1011|Homo sapiens polymerase (DNA directe...    32   1.6  

>AK130577-1|BAC85385.1|  478|Homo sapiens protein ( Homo sapiens
           cDNA FLJ27067 fis, clone SPL01356, highly similar to Ig
           gamma-1 chain C region. ).
          Length = 478

 Score = 33.1 bits (72), Expect = 0.92
 Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
 Frame = +1

Query: 253 AKWLSCNG-DVWGVGPTVVFASAAAL--FLYNELEATIFTAGDHAHISALEKTLISPSML 423
           AKWL  +G DVWG G TVV +SA+     ++    ++  T+G  A +  L K      + 
Sbjct: 127 AKWLYYSGMDVWGRGTTVVVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVT 186

Query: 424 LEMTTAGLLGSQHSDIVVL 480
           +   +  L    H+   VL
Sbjct: 187 VSWNSGALTSGVHTFPAVL 205


>AB209560-1|BAD92797.1| 1011|Homo sapiens polymerase (DNA directed),
            delta 1, catalytic subunit 125kDa variant protein.
          Length = 1011

 Score = 32.3 bits (70), Expect = 1.6
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = +2

Query: 278  TCGGSGPRWSSRVPRPCFC--TTSSRRLYSR 364
            +C  S P W+  VPR C+C  TT + R  SR
Sbjct: 934  SCASSSPSWARAVPRLCYCGGTTRAARRCSR 964


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,622,025
Number of Sequences: 237096
Number of extensions: 2072791
Number of successful extensions: 4855
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4850
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7591280850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)