Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4e05
         (669 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g24060.1 68418.m02826 expressed protein strong similarity to ...    31   0.92 
At5g54050.1 68418.m06722 DC1 domain-containing protein                 29   2.1  
At4g24020.1 68417.m03452 RWP-RK domain-containing protein simila...    29   2.1  
At5g54040.1 68418.m06721 DC1 domain-containing protein contains ...    29   2.8  
At5g17680.1 68418.m02072 disease resistance protein (TIR-NBS-LRR...    27   8.5  

>At5g24060.1 68418.m02826 expressed protein strong similarity to
           unknown protein (emb|CAB61996.1); expression supported
           by MPSS
          Length = 464

 Score = 30.7 bits (66), Expect = 0.92
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +1

Query: 520 IHITICWFLSLCYADYVRKHYCQR 591
           +HIT C FL  CY+DY+ + Y +R
Sbjct: 13  MHITRCGFLK-CYSDYITRKYLRR 35


>At5g54050.1 68418.m06722 DC1 domain-containing protein 
          Length = 580

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = +1

Query: 121 CAMETMKIVHL*RCS*EKSALCMAGRSVSFSAHCDICDSHLETIAKWLSCN 273
           CA    K+ H  RC     +LC    + S    CDIC++  +   ++ +C+
Sbjct: 460 CATLPRKVKH--RCDDHFLSLCQGVGNASGDLWCDICETKTDPSVRYYTCD 508


>At4g24020.1 68417.m03452 RWP-RK domain-containing protein similar
           to nodule inception protein [Lotus japonicus]
           GI:6448579; contains Pfam profile: PF02042 RWP-RK domain
          Length = 959

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 487 LTKFLKNQQPQIHITICWFLSLCYADYVRKHY 582
           +TKF K Q P +H  + + L+ C+A  ++  Y
Sbjct: 428 ITKFCKTQYPLVHYALMFKLTTCFAISLQSSY 459


>At5g54040.1 68418.m06721 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 596

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = +1

Query: 121 CAMETMKIVHL*RCS*EKSALCMAGRSVSFSAHCDICDSHLETIAKWLSCN 273
           CA    K+ H  RC     +LC    S S    CDIC++  +    + +C+
Sbjct: 451 CAALPRKVKH--RCDDHYLSLCQGVGSASGDLWCDICETKTDPSVFYYTCD 499


>At5g17680.1 68418.m02072 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1294

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +1

Query: 427 EMTTAGLLGSQHSDIV-VLGPLTKFLKNQQPQIHITICWFLSLCYADYVRK 576
           E T A L    HSDI+ VL      L  Q+  I + I  F ++   DYVRK
Sbjct: 401 ESTLARLKTYPHSDIMEVLRVSYDGLDEQEKAIFLYISCFYNMKQVDYVRK 451


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,182,955
Number of Sequences: 28952
Number of extensions: 290972
Number of successful extensions: 784
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)