Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4e04
         (199 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe...    25   1.4  
SPAC1782.02c |||conserved fungal protein|Schizosaccharomyces pom...    24   3.2  
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    23   5.6  
SPAC4G9.19 |||DNAJ domain protein DNAJB family|Schizosaccharomyc...    23   7.4  
SPAC11H11.03c |||SMR and DUF1771 domain protein|Schizosaccharomy...    22   9.7  

>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +2

Query: 2   TSHLDTA*KTCNSFIKKYKDKNCIMV*KC*SYLQYNYNEAVVFLNSPSS 148
           TSHLDT  K  + FI+K    +C ++     Y    +N    +L  P S
Sbjct: 268 TSHLDTLTKGISQFIEKRDAHSCKLL-----YALLQFNHETEYLIQPWS 311


>SPAC1782.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 161

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -1

Query: 193 FSCWMVTFEGIGF 155
           F C M+TF GIGF
Sbjct: 11  FYCCMLTFAGIGF 23


>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +2

Query: 146 SPTEPNPFKCNHPTGKKK 199
           S T   PF+C++P+ KK+
Sbjct: 25  SHTGEKPFECSYPSCKKR 42


>SPAC4G9.19 |||DNAJ domain protein DNAJB family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 110 YNEAVVFLNSPSSPTEPNP 166
           Y+   +  N PS PT P+P
Sbjct: 106 YDRFGIHWNQPSHPTHPSP 124


>SPAC11H11.03c |||SMR and DUF1771 domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 206

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 101 QYNYNEAVVFLNSPSSPTEPNPFKC 175
           + N     V+L S +SP +PN F C
Sbjct: 139 EVNEGRIYVYLPSATSPIQPN-FNC 162


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 760,174
Number of Sequences: 5004
Number of extensions: 11553
Number of successful extensions: 21
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 2,362,478
effective HSP length: 45
effective length of database: 2,137,298
effective search space used: 42745960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)