Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4e04
         (199 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39565| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.78 
SB_25792| Best HMM Match : Extensin_2 (HMM E-Value=1)                  27   3.1  
SB_24403| Best HMM Match : BRF1 (HMM E-Value=1.2)                      26   4.2  
SB_51535| Best HMM Match : W2 (HMM E-Value=4e-29)                      25   7.3  
SB_49284| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     25   9.6  
SB_48408| Best HMM Match : Lig_chan (HMM E-Value=0.19)                 25   9.6  
SB_37947| Best HMM Match : SAP (HMM E-Value=8e-07)                     25   9.6  
SB_28015| Best HMM Match : 7tm_1 (HMM E-Value=0.056)                   25   9.6  
SB_6709| Best HMM Match : PCNA_C (HMM E-Value=9.8)                     25   9.6  

>SB_39565| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 234

 Score = 28.7 bits (61), Expect = 0.78
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -2

Query: 189 PVGWLHLKGLGSVGDEGLFK 130
           P GWLH + LG++ D+G+ +
Sbjct: 94  PQGWLHTEDLGTMDDQGMIE 113


>SB_25792| Best HMM Match : Extensin_2 (HMM E-Value=1)
          Length = 440

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 134 NSPSSPTEPNPFKCNHP 184
           NSPSS + P P +  HP
Sbjct: 12  NSPSSSSRPQPLRATHP 28


>SB_24403| Best HMM Match : BRF1 (HMM E-Value=1.2)
          Length = 623

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +2

Query: 95  YLQYNYNEAVVFLNSPSSPTEPNPFKCNHPTG 190
           Y++     +V   +S SSP  P P + N  TG
Sbjct: 504 YMRTGNQASVYTASSQSSPVRPTPVRANSSTG 535


>SB_51535| Best HMM Match : W2 (HMM E-Value=4e-29)
          Length = 770

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +2

Query: 143 SSPTEPNPFKCNHPTGKK 196
           +SP  P P  C HP G K
Sbjct: 263 NSPPHPGPMFCRHPGGGK 280


>SB_49284| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 1041

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +2

Query: 83   KC*SYLQYNYNEAVVFLNSPSSPTEPNPFKCNH 181
            KC  Y   ++N++ + +    S T   PFKC H
Sbjct: 933  KC-QYCVRSFNDSQMLVRHIRSHTGEKPFKCKH 964


>SB_48408| Best HMM Match : Lig_chan (HMM E-Value=0.19)
          Length = 705

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 78  CKSVKAICNIIIMKQLCF 131
           CK   A+C ++I+  LCF
Sbjct: 409 CKDPNALCVVVILDVLCF 426


>SB_37947| Best HMM Match : SAP (HMM E-Value=8e-07)
          Length = 389

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 137 SPSSPTEPNPFKCNHPT 187
           SP+SP  PNP   +HP+
Sbjct: 362 SPNSPGSPNPTLFSHPS 378


>SB_28015| Best HMM Match : 7tm_1 (HMM E-Value=0.056)
          Length = 239

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 92  SYLQYNYNEAVVFLNSPSSP 151
           +Y  YN+ E + FLNS  +P
Sbjct: 140 TYAFYNWTETIAFLNSSINP 159


>SB_6709| Best HMM Match : PCNA_C (HMM E-Value=9.8)
          Length = 279

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 137 SPSSPTEPNPFKCNHPT 187
           SP+SP  PNP   +HP+
Sbjct: 151 SPNSPGSPNPTLFSHPS 167


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,450,288
Number of Sequences: 59808
Number of extensions: 82735
Number of successful extensions: 220
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 16,821,457
effective HSP length: 44
effective length of database: 14,189,905
effective search space used: 297988005
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)