Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4e04
         (199 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g25640.1 68416.m03191 expressed protein contains Pfam profile...    26   3.0  
At5g46915.1 68418.m05784 transcriptional factor B3 family protei...    26   4.0  
At4g33590.1 68417.m04772 hypothetical protein                          26   4.0  
At2g16210.1 68415.m01857 transcriptional factor B3 family protei...    26   4.0  
At1g16630.1 68414.m01992 expressed protein                             25   5.3  
At3g10710.1 68416.m01289 pectinesterase family protein contains ...    25   6.9  
At5g04960.1 68418.m00525 pectinesterase family protein contains ...    25   9.2  
At1g35470.2 68414.m04401 SPla/RYanodine receptor (SPRY) domain-c...    25   9.2  
At1g35470.1 68414.m04400 SPla/RYanodine receptor (SPRY) domain-c...    25   9.2  

>At3g25640.1 68416.m03191 expressed protein contains Pfam profile
           PF04759: Protein of unknown function, DUF617
          Length = 267

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
 Frame = +2

Query: 104 YNYNEAVVF--LNSPSSPTEPNPFKCNHPTGKKK 199
           YN+NE  V    N  S PT P+ F       KKK
Sbjct: 43  YNHNEKKVLTRFNFSSDPTRPDQFNAQQIMKKKK 76


>At5g46915.1 68418.m05784 transcriptional factor B3 family protein
           contains Pfam profile PF02362: B3 DNA binding domain
          Length = 288

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = +2

Query: 104 YNYNEAVVFLNSPSSPTEPNPFKCNHPTGKK 196
           Y YN  +        P E   FK +HP GKK
Sbjct: 196 YLYNLRIRSSVKDQMPVEKTIFKVHHPNGKK 226


>At4g33590.1 68417.m04772 hypothetical protein 
          Length = 466

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 195 FFPVGWLHLKGLGSV 151
           FFP GWL L G+G +
Sbjct: 368 FFPKGWLKLAGVGQL 382


>At2g16210.1 68415.m01857 transcriptional factor B3 family protein
           contains Pfam profile PF02362: B3 DNA binding domain
          Length = 291

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 6/31 (19%)
 Frame = +2

Query: 122 VVFLNSPSS------PTEPNPFKCNHPTGKK 196
           +VFL  P+S      P E   FK +HP GKK
Sbjct: 212 LVFLRIPNSVSKDQVPDEKTVFKIHHPNGKK 242


>At1g16630.1 68414.m01992 expressed protein
          Length = 845

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 134 NSPSSPTEPNPFKCNHPTG 190
           +SPS P+ PNP + N  TG
Sbjct: 21  SSPSMPSRPNPKQRNSETG 39


>At3g10710.1 68416.m01289 pectinesterase family protein contains
           similarity to pectinesterase GB:AAB57671 [Citrus
           sinensis]; contains Pfam profile: PF01095 pectinesterase
          Length = 561

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +3

Query: 84  SVKAICNIIIMKQLCF 131
           SVKA+C++ + K+ CF
Sbjct: 69  SVKAVCDVTLHKEKCF 84


>At5g04960.1 68418.m00525 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 564

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +3

Query: 84  SVKAICNIIIMKQLCF 131
           SVKA+C++ + K+ CF
Sbjct: 67  SVKALCDVTLHKEKCF 82


>At1g35470.2 68414.m04401 SPla/RYanodine receptor (SPRY)
           domain-containing protein similar to RanBPM [Homo
           sapiens] GI:15080674; contains Pfam profile PF00622:
           SPRY domain
          Length = 467

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
 Frame = -3

Query: 140 GYLKTQLLHYNY--IADSFNTFT 78
           G +KT LLHY Y    D+FN  T
Sbjct: 250 GLVKTYLLHYGYEETLDAFNLAT 272


>At1g35470.1 68414.m04400 SPla/RYanodine receptor (SPRY)
           domain-containing protein similar to RanBPM [Homo
           sapiens] GI:15080674; contains Pfam profile PF00622:
           SPRY domain
          Length = 465

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
 Frame = -3

Query: 140 GYLKTQLLHYNY--IADSFNTFT 78
           G +KT LLHY Y    D+FN  T
Sbjct: 250 GLVKTYLLHYGYEETLDAFNLAT 272


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,875,541
Number of Sequences: 28952
Number of extensions: 55106
Number of successful extensions: 159
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 12,070,560
effective HSP length: 45
effective length of database: 10,767,720
effective search space used: 215354400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)