Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte4e02
(728 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en... 79 2e-15
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET... 79 2e-15
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET... 79 2e-15
U42848-3|AAA83609.1| 693|Caenorhabditis elegans Hypothetical pr... 30 1.5
U37429-9|AAA79344.3| 796|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z54342-17|CAA91155.2| 365|Caenorhabditis elegans Hypothetical p... 28 5.9
Z49913-8|CAA90148.2| 365|Caenorhabditis elegans Hypothetical pr... 28 5.9
U55374-8|AAB36868.3| 1538|Caenorhabditis elegans Uncoordinated p... 28 5.9
U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated p... 28 5.9
U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated p... 28 5.9
AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage ... 28 5.9
AF025461-6|AAK84545.1| 335|Caenorhabditis elegans Hypothetical ... 28 5.9
AF040650-6|AAB95007.2| 325|Caenorhabditis elegans Hypothetical ... 28 7.9
>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
protein precursor protein.
Length = 2272
Score = 79.4 bits (187), Expect = 2e-15
Identities = 56/216 (25%), Positives = 104/216 (48%), Gaps = 3/216 (1%)
Frame = +3
Query: 24 SNRHTKEPMVITSTAST-AFERVSLDLMGSLDVDNFNYKYILTLQCDLTKYVEAYPLENK 200
+N H+K +T T E V+ DLM + + +YILT+ TKY A P+ +K
Sbjct: 1602 ANDHSKLTSSLTPYRMTFPLEIVACDLM-DVGLSVQGNRYILTIIDLFTKYGTAVPIPDK 1660
Query: 201 DTVSVARSFVNNFILRYG-IPTEIITDQGTEFMSSVFTEICNLLHIKKLHSTAYHHETLG 377
+V ++FV + + G IP +++TDQG EF++ +F + ++L I+ + + Y+ G
Sbjct: 1661 KAETVLKAFVERWAIGEGRIPLKLLTDQGKEFVNGLFAQFTHMLKIEHITTKGYNSRANG 1720
Query: 378 GLENTHKVLGAYLRIQCDNNKTDWSSWLPFWCFSFNTTVHSETKYTPFELVFGKHCNLPS 557
+E +K + ++ + +W + + +++N VH T TP L+ G+ P
Sbjct: 1721 AVERFNKTI-MHIMKKKTAVPMEWDDQVVYAVYAYNNCVHENTGETPMFLMHGRDVMGPL 1779
Query: 558 NIEQNSYVDPLY-NPDSYPLELKYRIQRAQAEARNN 662
+ V Y + D Y L + + Q A+ +
Sbjct: 1780 EMSGEDAVGINYADMDEYKHLLTQELLKVQKIAKEH 1815
>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
protein, isoforma protein.
Length = 2175
Score = 79.4 bits (187), Expect = 2e-15
Identities = 56/216 (25%), Positives = 104/216 (48%), Gaps = 3/216 (1%)
Frame = +3
Query: 24 SNRHTKEPMVITSTAST-AFERVSLDLMGSLDVDNFNYKYILTLQCDLTKYVEAYPLENK 200
+N H+K +T T E V+ DLM + + +YILT+ TKY A P+ +K
Sbjct: 1505 ANDHSKLTSSLTPYRMTFPLEIVACDLM-DVGLSVQGNRYILTIIDLFTKYGTAVPIPDK 1563
Query: 201 DTVSVARSFVNNFILRYG-IPTEIITDQGTEFMSSVFTEICNLLHIKKLHSTAYHHETLG 377
+V ++FV + + G IP +++TDQG EF++ +F + ++L I+ + + Y+ G
Sbjct: 1564 KAETVLKAFVERWAIGEGRIPLKLLTDQGKEFVNGLFAQFTHMLKIEHITTKGYNSRANG 1623
Query: 378 GLENTHKVLGAYLRIQCDNNKTDWSSWLPFWCFSFNTTVHSETKYTPFELVFGKHCNLPS 557
+E +K + ++ + +W + + +++N VH T TP L+ G+ P
Sbjct: 1624 AVERFNKTI-MHIMKKKTAVPMEWDDQVVYAVYAYNNCVHENTGETPMFLMHGRDVMGPL 1682
Query: 558 NIEQNSYVDPLY-NPDSYPLELKYRIQRAQAEARNN 662
+ V Y + D Y L + + Q A+ +
Sbjct: 1683 EMSGEDAVGINYADMDEYKHLLTQELLKVQKIAKEH 1718
>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
protein, isoformb protein.
Length = 2186
Score = 79.4 bits (187), Expect = 2e-15
Identities = 56/216 (25%), Positives = 104/216 (48%), Gaps = 3/216 (1%)
Frame = +3
Query: 24 SNRHTKEPMVITSTAST-AFERVSLDLMGSLDVDNFNYKYILTLQCDLTKYVEAYPLENK 200
+N H+K +T T E V+ DLM + + +YILT+ TKY A P+ +K
Sbjct: 1516 ANDHSKLTSSLTPYRMTFPLEIVACDLM-DVGLSVQGNRYILTIIDLFTKYGTAVPIPDK 1574
Query: 201 DTVSVARSFVNNFILRYG-IPTEIITDQGTEFMSSVFTEICNLLHIKKLHSTAYHHETLG 377
+V ++FV + + G IP +++TDQG EF++ +F + ++L I+ + + Y+ G
Sbjct: 1575 KAETVLKAFVERWAIGEGRIPLKLLTDQGKEFVNGLFAQFTHMLKIEHITTKGYNSRANG 1634
Query: 378 GLENTHKVLGAYLRIQCDNNKTDWSSWLPFWCFSFNTTVHSETKYTPFELVFGKHCNLPS 557
+E +K + ++ + +W + + +++N VH T TP L+ G+ P
Sbjct: 1635 AVERFNKTI-MHIMKKKTAVPMEWDDQVVYAVYAYNNCVHENTGETPMFLMHGRDVMGPL 1693
Query: 558 NIEQNSYVDPLY-NPDSYPLELKYRIQRAQAEARNN 662
+ V Y + D Y L + + Q A+ +
Sbjct: 1694 EMSGEDAVGINYADMDEYKHLLTQELLKVQKIAKEH 1729
>U42848-3|AAA83609.1| 693|Caenorhabditis elegans Hypothetical
protein C31H1.1 protein.
Length = 693
Score = 30.3 bits (65), Expect = 1.5
Identities = 39/158 (24%), Positives = 60/158 (37%), Gaps = 4/158 (2%)
Frame = +3
Query: 162 LTKYVEAYPLENKDTVSVARSFVNNF----ILRYGIPTEIITDQGTEFMSSVFTEICNLL 329
L KYV+ +EN S+ RS +NNF + + +P EI+ F +L
Sbjct: 28 LQKYVKN--IENISKESINRSVLNNFLETVVHQKSLPFEILRTMTDHFNYGPRLNFNHLH 85
Query: 330 HIKKLHSTAYHHETLGGLENTHKVLGAYLRIQCDNNKTDWSSWLPFWCFSFNTTVHSETK 509
++LHST E LG I N+ + S W F T T+
Sbjct: 86 QQQQLHSTIIPSEYLGDKSGFESRTLPSESIMSANSSSLGSHWKRIDSF----TSGKSTQ 141
Query: 510 YTPFELVFGKHCNLPSNIEQNSYVDPLYNPDSYPLELK 623
P + K +PS+I N+ P + + + K
Sbjct: 142 SIP-TTISSKPLTIPSSISANTASIPPNHGSEFSKDFK 178
>U37429-9|AAA79344.3| 796|Caenorhabditis elegans Hypothetical
protein F09E5.5 protein.
Length = 796
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/44 (40%), Positives = 25/44 (56%)
Frame = -2
Query: 319 QISVNTDDINSVPWSVIISVGIPYLRIKLFTNDRATETVSLFSK 188
Q+ N D +N+ WS SV + YLR ++ T D A V +FSK
Sbjct: 549 QLIENMDALNT-KWSNAASVAVNYLREEVIT-DIAPSLVEIFSK 590
>Z54342-17|CAA91155.2| 365|Caenorhabditis elegans Hypothetical
protein C08H9.8 protein.
Length = 365
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -2
Query: 157 HCNVRIYL*LKLSTSNDPIK 98
HC+ RIY +KL S DPIK
Sbjct: 316 HCSFRIYEFMKLCWSTDPIK 335
>Z49913-8|CAA90148.2| 365|Caenorhabditis elegans Hypothetical
protein C08H9.8 protein.
Length = 365
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -2
Query: 157 HCNVRIYL*LKLSTSNDPIK 98
HC+ RIY +KL S DPIK
Sbjct: 316 HCSFRIYEFMKLCWSTDPIK 335
>U55374-8|AAB36868.3| 1538|Caenorhabditis elegans Uncoordinated
protein 2, isoform a protein.
Length = 1538
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/43 (37%), Positives = 28/43 (65%)
Frame = +1
Query: 352 QLIIMRLLEVWKTLIRF*VLILGFSVIIIKQIGAVGFHSGAFH 480
Q+++ +L L++ +L+L F++II IG + F+SGAFH
Sbjct: 109 QVVLKSILCAMAPLLQIGLLVL-FAIIIFAIIG-LEFYSGAFH 149
>U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated
protein 2, isoform c protein.
Length = 1926
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/43 (37%), Positives = 28/43 (65%)
Frame = +1
Query: 352 QLIIMRLLEVWKTLIRF*VLILGFSVIIIKQIGAVGFHSGAFH 480
Q+++ +L L++ +L+L F++II IG + F+SGAFH
Sbjct: 109 QVVLKSILCAMAPLLQIGLLVL-FAIIIFAIIG-LEFYSGAFH 149
>U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated
protein 2, isoform b protein.
Length = 2027
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/43 (37%), Positives = 28/43 (65%)
Frame = +1
Query: 352 QLIIMRLLEVWKTLIRF*VLILGFSVIIIKQIGAVGFHSGAFH 480
Q+++ +L L++ +L+L F++II IG + F+SGAFH
Sbjct: 235 QVVLKSILCAMAPLLQIGLLVL-FAIIIFAIIG-LEFYSGAFH 275
>AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage
activated calciumchannel alpha-1 subunit protein.
Length = 2027
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/43 (37%), Positives = 28/43 (65%)
Frame = +1
Query: 352 QLIIMRLLEVWKTLIRF*VLILGFSVIIIKQIGAVGFHSGAFH 480
Q+++ +L L++ +L+L F++II IG + F+SGAFH
Sbjct: 235 QVVLKSILCAMAPLLQIGLLVL-FAIIIFAIIG-LEFYSGAFH 275
>AF025461-6|AAK84545.1| 335|Caenorhabditis elegans Hypothetical
protein M01D1.10 protein.
Length = 335
Score = 28.3 bits (60), Expect = 5.9
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -3
Query: 669 IRNCFLLQLVLFEFCILVLKGKNQDYIRD 583
++N L+ ++ +FC VL K + +IRD
Sbjct: 18 LKNVLLIMGIIEQFCFSVLSNKTKQFIRD 46
>AF040650-6|AAB95007.2| 325|Caenorhabditis elegans Hypothetical
protein T04B8.1 protein.
Length = 325
Score = 27.9 bits (59), Expect = 7.9
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Frame = +3
Query: 369 TLGGLENTHKVLGAYLRIQCDNNKTDWSSWLPFWCFSFNTTVHSETKYTPF-ELV-FGKH 542
T+ GLENT + +RIQ D N DW++ L C + + + KY E + +
Sbjct: 65 TILGLENT--ITDDTVRIQFDENAKDWNTRLR--CPHQSGIMGIDVKYGKHGEFIELTVY 120
Query: 543 CNLPSNIEQN 572
C P + EQN
Sbjct: 121 CGAPFDSEQN 130
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,803,762
Number of Sequences: 27780
Number of extensions: 292407
Number of successful extensions: 769
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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