Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4e02
         (728 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g50360.1 68414.m05645 myosin family protein contains Pfam pro...    33   0.15 
At3g19960.1 68416.m02526 myosin (ATM) nearly identical to myosin...    30   1.8  
At5g15030.1 68418.m01762 paired amphipathic helix repeat-contain...    29   2.4  
At3g50070.1 68416.m05474 cyclin family protein similar to cyclin...    28   5.5  
At5g53860.2 68418.m06698 expressed protein                             28   7.3  
At3g20880.1 68416.m02640 zinc finger (C2H2 type) protein (WIP4) ...    28   7.3  
At4g10260.1 68417.m01684 pfkB-type carbohydrate kinase family pr...    27   9.6  

>At1g50360.1 68414.m05645 myosin family protein contains Pfam
           profiles: PF00063 myosin head (motor domain), PF00612 IQ
           calmodulin-binding motif
          Length = 1153

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -2

Query: 124 LSTSNDPIKSKLTLSKAVDAVDVITIGSFVCLLE 23
           +  +ND I  KLTLS+A+DA D +    + CL +
Sbjct: 462 MRVNNDTIVQKLTLSQAIDARDALAKSIYACLFD 495


>At3g19960.1 68416.m02526 myosin (ATM) nearly identical to myosin
           [Arabidopsis thaliana] GI:6491702; similar to myosin
           GI:6491702 from [Arabidopsis thaliana] ;contains Pfam
           profiles: PF00063: myosin head (motor domain), PF00612:
           IQ calmodulin-binding motif; identical to cDNA myosin
           (ATM) GI:297068
          Length = 1166

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 112 NDPIKSKLTLSKAVDAVDVITIGSFVCLLE 23
           ND I  KLTL +A+DA D +    + CL +
Sbjct: 474 NDTIVQKLTLPQAIDARDALAKSIYSCLFD 503


>At5g15030.1 68418.m01762 paired amphipathic helix repeat-containing
           protein low similarity to transcriptional repressor
           SIN3B [Mus musculus] GI:2921547; contains Pfam profile
           PF02671: Paired amphipathic helix repeat
          Length = 271

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 495 HSETKYTPFELVFGKHCNLPSNIEQNSYVDP 587
           H ET+ TP E+V  +      NIE++ Y+DP
Sbjct: 48  HEETERTPDEIVVPRSPRHGGNIERSIYLDP 78


>At3g50070.1 68416.m05474 cyclin family protein similar to cyclin
           D3.1 protein [Nicotiana tabacum] GI:4160300, CycD3;2
           [Lycopersicon esculentum] GI:6434199; contains Pfam
           profiles PF00134: Cyclin, N-terminal domain, PF02984:
           Cyclin, C-terminal domain
          Length = 361

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -3

Query: 87  PSQKQWMPWM**PLAPLYVYWNAFESDN 4
           PS+K+ M WM  P +P+ V+  +F SD+
Sbjct: 283 PSKKRMMNWMQQPASPIGVFDASFSSDS 310


>At5g53860.2 68418.m06698 expressed protein
          Length = 422

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
 Frame = -2

Query: 328 NKLQISVNTDDINSVPW---SVIISVGIPYLRI 239
           NKLQ+ ++ DDI   PW   +V+  +  PY  I
Sbjct: 184 NKLQVRISADDIMEPPWKAYNVLKKMDYPYEHI 216


>At3g20880.1 68416.m02640 zinc finger (C2H2 type) protein (WIP4)
           identical to WIP4 protein [Arabidopsis thaliana]
           gi|18376500|emb|CAC86168; contains Pfam domain, PF00096:
           Zinc finger, C2H2 type
          Length = 412

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 21/88 (23%), Positives = 36/88 (40%)
 Frame = +3

Query: 351 TAYHHETLGGLENTHKVLGAYLRIQCDNNKTDWSSWLPFWCFSFNTTVHSETKYTPFELV 530
           T  HH  +  L      L + L++  D +    + ++ ++ +SFN        Y   +  
Sbjct: 41  TQLHHLEISCLLLLFFSLSSLLKLMADPDCIFRNGYVDYYNYSFNYATSLSRIYNSHDSF 100

Query: 531 FGKHCNLPSNIEQNSYVDPLYNPDSYPL 614
           +  H     NI +N     L +PDS PL
Sbjct: 101 YYPHQTTNPNINEN---PNLTSPDSPPL 125


>At4g10260.1 68417.m01684 pfkB-type carbohydrate kinase family
           protein contains Pfam profile: PF00294 pfkB family
           carbohydrate kinase
          Length = 324

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = +3

Query: 174 VEAYPLENKDTVSVARSFVNNFILRYGIPTEIITDQGTEFMSSVFTEIC 320
           V  Y ++  DT     SFV  F++  G    I+ D+G    +  F   C
Sbjct: 247 VPGYAVKAVDTTGAGDSFVGAFLVSLGKDGSILDDEGKLKEALAFANAC 295


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,511,202
Number of Sequences: 28952
Number of extensions: 254686
Number of successful extensions: 685
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)