Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte4d24
(691 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q09FA3 Cluster: Heme maturase; n=2; Tetrahymena|Rep: He... 39 0.13
UniRef50_A5K9K8 Cluster: Putative uncharacterized protein; n=1; ... 38 0.31
UniRef50_A0IZ99 Cluster: Putative outer membrane adhesin like pr... 37 0.40
UniRef50_A7TLE5 Cluster: Putative uncharacterized protein; n=1; ... 37 0.53
UniRef50_Q24HY5 Cluster: Myb-like DNA-binding domain containing ... 36 0.93
UniRef50_Q4JVM6 Cluster: Putative cell wall-associated hydrolase... 35 1.6
UniRef50_A0LSH8 Cluster: Glycoside hydrolase, family 6 precursor... 35 1.6
UniRef50_Q8T5T1 Cluster: Midasin; n=2; Giardia intestinalis|Rep:... 35 1.6
UniRef50_UPI000050FEA7 Cluster: COG0552: Signal recognition part... 35 2.2
UniRef50_UPI0000F1E8FB Cluster: PREDICTED: similar to Double C2,... 34 2.9
UniRef50_Q8IDL5 Cluster: Putative uncharacterized protein PF13_0... 34 2.9
UniRef50_Q61WJ2 Cluster: Putative uncharacterized protein CBG043... 34 2.9
UniRef50_UPI00005102CC Cluster: hypothetical protein BlinB010031... 34 3.8
UniRef50_Q18956 Cluster: Putative uncharacterized protein; n=2; ... 34 3.8
UniRef50_Q9J8C9 Cluster: ORF4 hoar; n=1; Spodoptera exigua MNPV|... 33 6.6
UniRef50_A0LVL3 Cluster: Glycoside hydrolase, family 9 precursor... 33 6.6
UniRef50_A6MGZ3 Cluster: Extensin-like protein; n=1; Lilium long... 33 6.6
UniRef50_UPI000066015D Cluster: Homolog of Oncorhynchus masou "A... 33 8.7
UniRef50_Q7TU06 Cluster: Probable Biopolymer transport exbD prot... 33 8.7
UniRef50_Q1D8Z4 Cluster: Putative lipoprotein; n=1; Myxococcus x... 33 8.7
UniRef50_A0LSI1 Cluster: Cellulose-binding, family II precursor;... 33 8.7
UniRef50_Q16ZU1 Cluster: Putative uncharacterized protein; n=2; ... 33 8.7
UniRef50_A2QFI6 Cluster: Putative uncharacterized protein; n=1; ... 33 8.7
UniRef50_P87136 Cluster: Uncharacterized protein C57A7.05; n=1; ... 33 8.7
>UniRef50_Q09FA3 Cluster: Heme maturase; n=2; Tetrahymena|Rep: Heme
maturase - Tetrahymena malaccensis
Length = 519
Score = 38.7 bits (86), Expect = 0.13
Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 4/90 (4%)
Frame = -2
Query: 261 LSGNNFLFVKFYVGIVYIYLMAICFNFYF--VMIRFCNI**TN*FRYLRTLIHVLILLGF 88
L NN++F K +V YL+ F F+F +++R+ I + F + L ++ +
Sbjct: 211 LQHNNYIFFKIHVRF---YLLNFIFKFFFCILLVRYNLIQSIHNFISIDNLNQFIMYIWL 267
Query: 87 NVYCVLFLVNFY--KLNRFFVKNIKIFNLR 4
+ ++ ++NF K N +KNIKIFN++
Sbjct: 268 IILVIILILNFQIIKFNNL-IKNIKIFNIK 296
>UniRef50_A5K9K8 Cluster: Putative uncharacterized protein; n=1;
Plasmodium vivax|Rep: Putative uncharacterized protein -
Plasmodium vivax
Length = 820
Score = 37.5 bits (83), Expect = 0.31
Identities = 21/74 (28%), Positives = 36/74 (48%)
Frame = +3
Query: 372 AQSQGTESPGSPNIFEEPEQSFAAAENDNHIDLPSTSRSHDHDPSEGPLDVPSDEPIQID 551
A+ +GT G+ N + AAE+ N + + DP+EGP + P+++P +
Sbjct: 120 AKGEGTPDKGTHNGSARKGKEKNAAEDPNE----DPNEDPNEDPNEGPTEDPNEDPNEDP 175
Query: 552 LAGPLRYDNDDSND 593
GP N+D N+
Sbjct: 176 NEGPTEDPNEDPNE 189
>UniRef50_A0IZ99 Cluster: Putative outer membrane adhesin like
proteiin precursor; n=1; Shewanella woodyi ATCC
51908|Rep: Putative outer membrane adhesin like proteiin
precursor - Shewanella woodyi ATCC 51908
Length = 2074
Score = 37.1 bits (82), Expect = 0.40
Identities = 28/100 (28%), Positives = 42/100 (42%), Gaps = 2/100 (2%)
Frame = +3
Query: 363 YPTAQSQGTESPGS--PNIFEEPEQSFAAAENDNHIDLPSTSRSHDHDPSEGPLDVPSDE 536
Y +QG +S G + F+ A+ND D +DHD +D+ SD
Sbjct: 1561 YDIDMTQGDDSDGDGIDDRFDIDNTGHFDADNDGISDAKLEENDNDHDGLADHIDIDSDN 1620
Query: 537 PIQIDLAGPLRYDNDDSNDTVLNIIINGPGHLPAQSEDSN 656
ID + + D D+ ND + +I P P +DSN
Sbjct: 1621 DGIIDTSETVAQDIDEDNDGIADIF--DPDFTP--GDDSN 1656
>UniRef50_A7TLE5 Cluster: Putative uncharacterized protein; n=1;
Vanderwaltozyma polyspora DSM 70294|Rep: Putative
uncharacterized protein - Vanderwaltozyma polyspora DSM
70294
Length = 957
Score = 36.7 bits (81), Expect = 0.53
Identities = 37/114 (32%), Positives = 54/114 (47%), Gaps = 4/114 (3%)
Frame = +3
Query: 354 MSQYPTAQSQGTESPGSPNIFEEPEQSFAAAE---NDNHIDLPSTSRSHDHDPSEGPLDV 524
+SQ Q++ ES S I E ++S + + +D++ +L TSRS D S G L
Sbjct: 441 ISQSSLVQNKEDESDSSEKILEYTQKSSSGRKRRLSDDYEEL-ETSRS-DKSESTGRLHE 498
Query: 525 PSDEPIQIDLAGPL-RYDNDDSNDTVLNIIINGPGHLPAQSEDSNLTSPLTSFS 683
S E ID A L DND SND V ++ I + + DS S T+ +
Sbjct: 499 NSGEVKNIDSAVELINSDNDFSNDEVSDVTIEKGSVVTNKRTDSYRPSKRTNIA 552
>UniRef50_Q24HY5 Cluster: Myb-like DNA-binding domain containing
protein; n=1; Tetrahymena thermophila SB210|Rep:
Myb-like DNA-binding domain containing protein -
Tetrahymena thermophila SB210
Length = 1033
Score = 35.9 bits (79), Expect = 0.93
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Frame = +3
Query: 360 QYPTAQSQGTESPGSPNIFEEPEQSFAAAENDNHID--LPSTSRSHDHDPSEGPLDVPS 530
QY Q++ +SP +PN P++ F + +ND+HI+ LP SR +DH P + +PS
Sbjct: 640 QYDGFQNR-KKSPFTPNGNGIPKKEFESDQNDHHINYSLPQ-SRRYDHQPLDPNFGMPS 696
>UniRef50_Q4JVM6 Cluster: Putative cell wall-associated hydrolase
precursor; n=1; Corynebacterium jeikeium K411|Rep:
Putative cell wall-associated hydrolase precursor -
Corynebacterium jeikeium (strain K411)
Length = 624
Score = 35.1 bits (77), Expect = 1.6
Identities = 31/143 (21%), Positives = 62/143 (43%), Gaps = 3/143 (2%)
Frame = +3
Query: 201 SNKCKQYLRKILQTKNCFRLTRNVFSLIH-FTDISDCCSY*PVQRVTQ*LRKMS--QYPT 371
+ K K+Y R + + K + R+ + + FT+ S ++V + + + +
Sbjct: 210 TEKQKEYKRLLDEKKKAEKALRDARAAVETFTNTHPEASSWDKRKVAEKAAEKAGAKVEK 269
Query: 372 AQSQGTESPGSPNIFEEPEQSFAAAENDNHIDLPSTSRSHDHDPSEGPLDVPSDEPIQID 551
A + E+P E +S A+N + T+ S+D+ P+ GPL P+ P ++
Sbjct: 270 ADDKSEETPAEETQSTENAESTENADNTENTQSAETNESNDNTPNPGPLGNPAGLP-ELP 328
Query: 552 LAGPLRYDNDDSNDTVLNIIING 620
YD + S D+ ++G
Sbjct: 329 TELQSSYDLNASGDSQRQAALDG 351
>UniRef50_A0LSH8 Cluster: Glycoside hydrolase, family 6 precursor;
n=3; Actinomycetales|Rep: Glycoside hydrolase, family 6
precursor - Acidothermus cellulolyticus (strain ATCC
43068 / 11B)
Length = 1209
Score = 35.1 bits (77), Expect = 1.6
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Frame = +3
Query: 357 SQYPTAQSQGTESPGSPNIFEEPEQSFAAAENDNHIDLPSTSRSHDHDPSEGPLDVPSDE 536
S P+ + SP SP+ P S + + + + PS+S S PS P PS
Sbjct: 501 SPSPSPSPSSSPSP-SPSSSPSPSPSPSPSPSSSPSPSPSSSPSPSPSPSPSPSSSPSPS 559
Query: 537 PIQIDLAGPLR--YDNDDS 587
P ++G L+ Y N+DS
Sbjct: 560 PTSSPVSGGLKVQYKNNDS 578
>UniRef50_Q8T5T1 Cluster: Midasin; n=2; Giardia intestinalis|Rep:
Midasin - Giardia lamblia (Giardia intestinalis)
Length = 4835
Score = 35.1 bits (77), Expect = 1.6
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +3
Query: 423 PEQSFAAAENDNHIDLPSTSRS-HDHDPSEGPLDVPSDEPIQIDLAGPLRYDNDDSNDTV 599
P+Q A E D+ DLPS+ + +HD E P+D+ +E + ND+ D
Sbjct: 4250 PDQDACAIEEDDDRDLPSSDENAEEHDEHEAPVDIDDNE-----ASDEQSTYNDNDRDDA 4304
Query: 600 LNI 608
+NI
Sbjct: 4305 INI 4307
>UniRef50_UPI000050FEA7 Cluster: COG0552: Signal recognition
particle GTPase; n=1; Brevibacterium linens BL2|Rep:
COG0552: Signal recognition particle GTPase -
Brevibacterium linens BL2
Length = 574
Score = 34.7 bits (76), Expect = 2.2
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 6/81 (7%)
Frame = +3
Query: 360 QYPTAQSQGTESPGSPNIFEEP----EQSFAAAENDNHIDLPSTSRSHD--HDPSEGPLD 521
+ P A +Q + P P +EP E A ++D D + + + +P+E P D
Sbjct: 87 EQPKADTQPAKKPAEPAKVDEPSAPVEIPEAPKDDDGQDDSDGQAPTENPTEEPTEEPTD 146
Query: 522 VPSDEPIQIDLAGPLRYDNDD 584
PSDEP + P DD
Sbjct: 147 SPSDEPTEEPTDDPTEDPGDD 167
>UniRef50_UPI0000F1E8FB Cluster: PREDICTED: similar to Double C2,
gamma; n=1; Danio rerio|Rep: PREDICTED: similar to
Double C2, gamma - Danio rerio
Length = 364
Score = 34.3 bits (75), Expect = 2.9
Identities = 21/47 (44%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +3
Query: 393 SPGSPNIFEE-PEQSFAAAENDNHIDLPSTSRSHDHDPSEGPLDVPS 530
SP I EE PEQS+ E + +L S SRS P E PLD+ S
Sbjct: 220 SPLVQKISEEMPEQSWTEKECQKNAELTSESRSQSSTPLETPLDLES 266
>UniRef50_Q8IDL5 Cluster: Putative uncharacterized protein
PF13_0254; n=2; Plasmodium|Rep: Putative uncharacterized
protein PF13_0254 - Plasmodium falciparum (isolate 3D7)
Length = 3855
Score = 34.3 bits (75), Expect = 2.9
Identities = 21/76 (27%), Positives = 36/76 (47%)
Frame = +3
Query: 420 EPEQSFAAAENDNHIDLPSTSRSHDHDPSEGPLDVPSDEPIQIDLAGPLRYDNDDSNDTV 599
EP + HI P ++H P++VP ++PI + + P+ ND ND +
Sbjct: 376 EPINEHINEHINEHISEPINEHINEH--INEPINVPINDPINVPINVPI---NDPINDPI 430
Query: 600 LNIIINGPGHLPAQSE 647
N+ IN P ++P +
Sbjct: 431 -NVPINDPINVPTNDQ 445
>UniRef50_Q61WJ2 Cluster: Putative uncharacterized protein CBG04386;
n=1; Caenorhabditis briggsae|Rep: Putative
uncharacterized protein CBG04386 - Caenorhabditis
briggsae
Length = 594
Score = 34.3 bits (75), Expect = 2.9
Identities = 19/58 (32%), Positives = 27/58 (46%)
Frame = +3
Query: 366 PTAQSQGTESPGSPNIFEEPEQSFAAAENDNHIDLPSTSRSHDHDPSEGPLDVPSDEP 539
P ++G + P P +EPE S +E + PS S + PS+ P PS EP
Sbjct: 129 PGPMTKGPQPPNPPEPSDEPEPSAEPSEQPSDAPQPSVQPSDEPQPSDQP--EPSAEP 184
>UniRef50_UPI00005102CC Cluster: hypothetical protein BlinB01003120;
n=1; Brevibacterium linens BL2|Rep: hypothetical protein
BlinB01003120 - Brevibacterium linens BL2
Length = 277
Score = 33.9 bits (74), Expect = 3.8
Identities = 25/83 (30%), Positives = 42/83 (50%)
Frame = +3
Query: 357 SQYPTAQSQGTESPGSPNIFEEPEQSFAAAENDNHIDLPSTSRSHDHDPSEGPLDVPSDE 536
S+ P+ + T +P SP I +P+ + D D P+ + + + PSE P D PSDE
Sbjct: 48 SKEPSPDVKPT-APISPEIPVKPKDPKSPGPTDEPTDEPTETPTDE--PSETPTDEPSDE 104
Query: 537 PIQIDLAGPLRYDNDDSNDTVLN 605
P G ++ +++ +D LN
Sbjct: 105 PTDPGGLG-VKDPDEEPDDEELN 126
>UniRef50_Q18956 Cluster: Putative uncharacterized protein; n=2;
Caenorhabditis elegans|Rep: Putative uncharacterized
protein - Caenorhabditis elegans
Length = 752
Score = 33.9 bits (74), Expect = 3.8
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Frame = +3
Query: 294 DISDCCSY*PVQRVTQ*LRKMSQYPTAQSQ----GTESPGSPNIFEEPEQSFAAAENDNH 461
+ S C+ PV R + S P A +Q + P SPN+ P ++ N N+
Sbjct: 594 EFSGVCTKGPVGRPSSEASSSSNQPEATTQQIVQNSSDPNSPNVNTNPSKNRNTTSNSNY 653
Query: 462 IDLP 473
I+LP
Sbjct: 654 IELP 657
>UniRef50_Q9J8C9 Cluster: ORF4 hoar; n=1; Spodoptera exigua
MNPV|Rep: ORF4 hoar - Spodoptera exigua MNPV
Length = 724
Score = 33.1 bits (72), Expect = 6.6
Identities = 19/59 (32%), Positives = 26/59 (44%)
Frame = +3
Query: 501 PSEGPLDVPSDEPIQIDLAGPLRYDNDDSNDTVLNIIINGPGHLPAQSEDSNLTSPLTS 677
P E P+D+ D+ D DND+ ND V + N + D N TSP+ S
Sbjct: 285 PREPPIDIEDDDDTDTDTDTDDDDDNDNDNDEVAD-DDNDNNKVADDDNDKNTTSPIAS 342
>UniRef50_A0LVL3 Cluster: Glycoside hydrolase, family 9 precursor;
n=4; cellular organisms|Rep: Glycoside hydrolase, family
9 precursor - Acidothermus cellulolyticus (strain ATCC
43068 / 11B)
Length = 1137
Score = 33.1 bits (72), Expect = 6.6
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Frame = +3
Query: 357 SQYPTAQSQGTESPGS-PNIFEEPEQSFAAAENDNHIDLPSTSRSHDHDPSEGPLDVPSD 533
S P+ + + SP S P+ P S + + + + PS+S S PS P+ PS
Sbjct: 684 SPSPSPSPRPSPSPSSSPSPSPSPSPSPSRSPSPSASPSPSSSPSPSSSPSSSPIPSPSS 743
Query: 534 EPIQIDLAGPLRYDNDDS 587
P+ + ++Y N+DS
Sbjct: 744 SPVSGGV--KVQYKNNDS 759
>UniRef50_A6MGZ3 Cluster: Extensin-like protein; n=1; Lilium
longiflorum|Rep: Extensin-like protein - Lilium
longiflorum (Trumpet lily)
Length = 162
Score = 33.1 bits (72), Expect = 6.6
Identities = 17/69 (24%), Positives = 33/69 (47%)
Frame = +3
Query: 438 AAAENDNHIDLPSTSRSHDHDPSEGPLDVPSDEPIQIDLAGPLRYDNDDSNDTVLNIIIN 617
+ A +D+ D S + + P + P++ P P + +A D+DD + ++ N
Sbjct: 52 SVATSDDDDDYKKLSDAEKNGPGDWPVEAPPPTPKDVPVATS---DDDDDYKKLTDVEKN 108
Query: 618 GPGHLPAQS 644
GPG P ++
Sbjct: 109 GPGDWPVEA 117
>UniRef50_UPI000066015D Cluster: Homolog of Oncorhynchus masou
"Apopolysialoglycoprotein precursor.; n=1; Takifugu
rubripes|Rep: Homolog of Oncorhynchus masou
"Apopolysialoglycoprotein precursor. - Takifugu rubripes
Length = 1628
Score = 32.7 bits (71), Expect = 8.7
Identities = 21/80 (26%), Positives = 33/80 (41%)
Frame = +3
Query: 426 EQSFAAAENDNHIDLPSTSRSHDHDPSEGPLDVPSDEPIQIDLAGPLRYDNDDSNDTVLN 605
E+ + +NH+ S+ H DPS P + + I + GP R +N LN
Sbjct: 1293 EKRTDSTNQENHLGTNSSPTEHPEDPSLAPDQIAVQDRPNICIIGPARMHQSSAN---LN 1349
Query: 606 IIINGPGHLPAQSEDSNLTS 665
+ N L S S ++S
Sbjct: 1350 EMQNSSDQLGHHSATSTISS 1369
>UniRef50_Q7TU06 Cluster: Probable Biopolymer transport exbD
protein; n=1; Pirellula sp.|Rep: Probable Biopolymer
transport exbD protein - Rhodopirellula baltica
Length = 146
Score = 32.7 bits (71), Expect = 8.7
Identities = 19/58 (32%), Positives = 29/58 (50%)
Frame = +3
Query: 411 IFEEPEQSFAAAENDNHIDLPSTSRSHDHDPSEGPLDVPSDEPIQIDLAGPLRYDNDD 584
IF A EN + +DLPS S + DP+ P+++ D Q+ L G + D D+
Sbjct: 31 IFFLVSSHLARQENRHAVDLPSAQSSIESDPNAAPINLTMDSSHQLWL-GATQVDLDE 87
>UniRef50_Q1D8Z4 Cluster: Putative lipoprotein; n=1; Myxococcus
xanthus DK 1622|Rep: Putative lipoprotein - Myxococcus
xanthus (strain DK 1622)
Length = 656
Score = 32.7 bits (71), Expect = 8.7
Identities = 16/29 (55%), Positives = 20/29 (68%)
Frame = +2
Query: 326 AKGNPMTTKNEPVSHRTEPGHRVTGESKY 412
AKG PM + N PVS RT PG+ + GE +Y
Sbjct: 91 AKGQPMESFNGPVSFRTVPGN-LMGEYRY 118
>UniRef50_A0LSI1 Cluster: Cellulose-binding, family II precursor; n=5;
Bacteria|Rep: Cellulose-binding, family II precursor -
Acidothermus cellulolyticus (strain ATCC 43068 / 11B)
Length = 1298
Score = 32.7 bits (71), Expect = 8.7
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Frame = +3
Query: 357 SQYPTAQSQGTESPGS-PNIFEEPEQSFAAAENDNHIDLPSTSRSHDHDPSEGPLDVPSD 533
S P+ + SP S P+ P S + + + + PS+S S PS P PS
Sbjct: 807 SSSPSPSPSPSSSPSSSPSPSPSPSPSPSRSPSPSASPSPSSSPSPSSSPSSSPSPTPSS 866
Query: 534 EPIQIDLAGPLRYDNDDS 587
P+ + ++Y N+DS
Sbjct: 867 SPVSGGV--KVQYKNNDS 882
>UniRef50_Q16ZU1 Cluster: Putative uncharacterized protein; n=2;
Aedes aegypti|Rep: Putative uncharacterized protein -
Aedes aegypti (Yellowfever mosquito)
Length = 1636
Score = 32.7 bits (71), Expect = 8.7
Identities = 20/60 (33%), Positives = 29/60 (48%)
Frame = +3
Query: 420 EPEQSFAAAENDNHIDLPSTSRSHDHDPSEGPLDVPSDEPIQIDLAGPLRYDNDDSNDTV 599
EPE+ + E H DLPS H+ P E L+ S PI+ + +DD ND++
Sbjct: 677 EPEEEYPEPE---HSDLPSLKSDHEFSP-ESDLEDESVIPIKRARTARVEKFSDDDNDSI 732
>UniRef50_A2QFI6 Cluster: Putative uncharacterized protein; n=1;
Aspergillus niger|Rep: Putative uncharacterized protein
- Aspergillus niger
Length = 108
Score = 32.7 bits (71), Expect = 8.7
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +3
Query: 435 FAAAENDNH-IDLPSTSRSHDHDPSEGPLDVPSDEPIQIDLAGPLRYDND 581
+ A +N +H I TS+S D PS P++ PS PIQ GP+ ++ D
Sbjct: 16 YEADDNTSHTIPSTETSKSVDPVPSAPPIN-PSQIPIQSVETGPIEFETD 64
>UniRef50_P87136 Cluster: Uncharacterized protein C57A7.05; n=1;
Schizosaccharomyces pombe|Rep: Uncharacterized protein
C57A7.05 - Schizosaccharomyces pombe (Fission yeast)
Length = 1337
Score = 32.7 bits (71), Expect = 8.7
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = +3
Query: 357 SQYPTAQSQGTESPGSPNIFEEPEQSF--AAAENDNHIDLPSTSRSHDHDPS 506
+Q P QSQ + +P + I +EP SF + E DN D+P SH +PS
Sbjct: 83 NQSPLNQSQSSANPVTFEIADEPSPSFNHSFFEKDNARDIPQ-QPSHSQNPS 133
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 659,463,379
Number of Sequences: 1657284
Number of extensions: 14022246
Number of successful extensions: 46379
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 43141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46136
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54132236449
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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