Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4d24
         (691 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    33   0.051
SPBC28F2.09 |||transcription factor TFIIA complex large subunit ...    29   0.63 
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1...    29   0.63 
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    27   1.9  
SPBC56F2.10c |alg5||dolichyl-phosphate beta-glucosyltransferase ...    26   4.5  
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe...    26   4.5  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        26   5.9  
SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2...    25   7.8  
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce...    25   7.8  

>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1337

 Score = 32.7 bits (71), Expect = 0.051
 Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = +3

Query: 357 SQYPTAQSQGTESPGSPNIFEEPEQSF--AAAENDNHIDLPSTSRSHDHDPS 506
           +Q P  QSQ + +P +  I +EP  SF  +  E DN  D+P    SH  +PS
Sbjct: 83  NQSPLNQSQSSANPVTFEIADEPSPSFNHSFFEKDNARDIPQ-QPSHSQNPS 133


>SPBC28F2.09 |||transcription factor TFIIA complex large subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 369

 Score = 29.1 bits (62), Expect = 0.63
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +3

Query: 492 DHDPSEGPLDVPSDEPIQIDLAGPLRYDNDDSNDT 596
           + D  + P+D PSDE I  DL  P   D+D++ +T
Sbjct: 285 NEDEKKPPVDTPSDEAINSDLDDP---DSDEAPET 316


>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 29.1 bits (62), Expect = 0.63
 Identities = 15/53 (28%), Positives = 23/53 (43%)
 Frame = +3

Query: 402 SPNIFEEPEQSFAAAENDNHIDLPSTSRSHDHDPSEGPLDVPSDEPIQIDLAG 560
           SP  +  P       E D+ +  P  + +HD +  +G    PSD  +  DL G
Sbjct: 230 SPQPYVRPTSDERPIETDSSVSAPKVA-NHDEELKQGKSTSPSDTVLHPDLNG 281


>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +3

Query: 420 EPEQSFAAAENDNHIDLPSTSRSHDHDPSEGPLDVPSD 533
           +P +S + +  D H DL S     + +  E  L+VPS+
Sbjct: 538 DPNKSLSCSVEDKHYDLHSAVAEENEEVDEELLNVPSN 575


>SPBC56F2.10c |alg5||dolichyl-phosphate beta-glucosyltransferase
           Alg5 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = -3

Query: 131 VIYVH*FMC*YYLVLMFIVYYFLS 60
           V+Y+  + C    +L+F+VYY+L+
Sbjct: 2   VVYIVLYTCLAGFILLFLVYYYLT 25


>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 719

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 213 KQYLRKILQTKNCFRLTRNVFSLIHFTDISDCCS 314
           K Y  + LQ  N +   R +F +   +DIS+ CS
Sbjct: 26  KSYREEFLQQWNHYETAREIFLVNPSSDISEFCS 59


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
 Frame = +3

Query: 384  GTESPGSPNIFEEPEQSFAAAENDNHIDLPSTSRSHDHDPSEGPLDVPSD-EPIQIDLAG 560
            G +    P+I E   Q     EN++H+DLP   +    D  EG +   SD E + ++ A 
Sbjct: 4060 GIDDEIQPDIQENNSQP--PPENEDHLDLPEDLKL---DEKEGDVSKDSDLEDMDMEAAD 4114

Query: 561  PLRYDNDDSND 593
              + + D   D
Sbjct: 4115 ENKEEADAEKD 4125


>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 479

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +3

Query: 531 DEPIQIDLAGPLRYDNDDSNDTVLNIIINGPGHLPAQ--SEDSNLTSPLTS 677
           D P+  D A  L   ND+ N  +LN + + P   P +  S+ S L  P T+
Sbjct: 342 DAPMDADSA--LEIPNDEDNGEILNKLKDSPFKKPKRRYSKSSTLVLPETN 390


>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 993

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 7/26 (26%), Positives = 18/26 (69%)
 Frame = +1

Query: 157 TKSNHNEIKVKTNGHQINVNNTYVKF 234
           T ++H  + + +NG ++ + +TY+K+
Sbjct: 272 TSASHGVLMLSSNGMEVLLRSTYIKY 297


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,728,122
Number of Sequences: 5004
Number of extensions: 57665
Number of successful extensions: 175
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)