Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4d24
         (691 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25491| Best HMM Match : Peptidase_M50 (HMM E-Value=2.2)             33   0.22 
SB_42441| Best HMM Match : DUF1484 (HMM E-Value=0.48)                  32   0.38 
SB_47206| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.25)           31   0.88 
SB_7838| Best HMM Match : Filamin (HMM E-Value=1.1e-22)                31   0.88 
SB_36677| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_33529| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_4071| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.0  
SB_46196| Best HMM Match : DUF1029 (HMM E-Value=3.6)                   30   2.0  
SB_29165| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_13345| Best HMM Match : Hormone_4 (HMM E-Value=3.9)                 30   2.0  
SB_11442| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_7165| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.0  
SB_1411| Best HMM Match : PT (HMM E-Value=0.079)                       29   2.7  
SB_54020| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_22307| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_1171| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.2  
SB_36147| Best HMM Match : Keratin_B2 (HMM E-Value=1.7)                28   6.2  
SB_35350| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_21820| Best HMM Match : DUF622 (HMM E-Value=2.7)                    28   6.2  
SB_30324| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  

>SB_25491| Best HMM Match : Peptidase_M50 (HMM E-Value=2.2)
          Length = 771

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +3

Query: 429 QSFAAAENDNHIDLPSTSRSHDHDPSEGPLDVPSDEPIQIDLAGPLRYDND 581
           +S      ++H  L   SR+   + S  PL   SD P++ +   PLRY++D
Sbjct: 493 ESHTPLRYESHAPLRYESRAPLRNKSHAPLRYESDAPLRYESHAPLRYESD 543



 Score = 29.1 bits (62), Expect = 3.6
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +3

Query: 429 QSFAAAENDNHIDLPSTSRSHDHDPSEGPLDVPSDEPIQIDLAGPLRYDN 578
           +S A   N +H  L   S +     S  PL   SD P++ +   PLRY++
Sbjct: 509 ESRAPLRNKSHAPLRYESDAPLRYESHAPLRYESDAPLRYESDAPLRYES 558


>SB_42441| Best HMM Match : DUF1484 (HMM E-Value=0.48)
          Length = 776

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = +2

Query: 305 LLQLLTCAKGNPMTTKNEPVSHRTEPGHRVTGESK 409
           +L+ L    G PMT  N  VSH+ EP   +TGE K
Sbjct: 471 ILRALDAQVGKPMTLSNPHVSHK-EPDDMITGERK 504


>SB_47206| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.25)
          Length = 340

 Score = 31.1 bits (67), Expect = 0.88
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = -2

Query: 132 RYLRTLIHVLILLGFNVYCVLFLVNFYKLNRFFVKNIKIFN 10
           +YL     VL  + F +Y  LF+ +FY+LN+F   N + F+
Sbjct: 165 KYLSAAPGVLFAICFALYATLFM-SFYRLNKFAKSNFRKFD 204


>SB_7838| Best HMM Match : Filamin (HMM E-Value=1.1e-22)
          Length = 820

 Score = 31.1 bits (67), Expect = 0.88
 Identities = 29/95 (30%), Positives = 37/95 (38%)
 Frame = +3

Query: 345 LRKMSQYPTAQSQGTESPGSPNIFEEPEQSFAAAENDNHIDLPSTSRSHDHDPSEGPLDV 524
           LR  +  P   + G+ +  SPN       + A  +  N     ST RS +  P   P D 
Sbjct: 109 LRSPNDAPNGPTHGS-TLRSPNAGPMRSPNDAPNDAPNGPTHGSTLRSTNAGPMRSPNDA 167

Query: 525 PSDEPIQIDLAGPLRYDNDDSNDTVLNIIINGPGH 629
           P+D P        LR  ND  ND       NGP H
Sbjct: 168 PNDAPTH---GSTLRSPNDAPNDAP-----NGPTH 194


>SB_36677| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 168

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -2

Query: 288 NVSMKKRFLLSGNNFLFVKFYVGIVYIYLMAIC 190
           N  +K  ++L  N +LF +FY  ++YI  +AIC
Sbjct: 2   NSKLKLNYVLCLNTWLFDQFYKHMIYIVSIAIC 34


>SB_33529| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 124

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -2

Query: 288 NVSMKKRFLLSGNNFLFVKFYVGIVYIYLMAIC 190
           N  +K  ++L  N +LF +FY  ++YI  +AIC
Sbjct: 2   NSKLKLNYVLWLNTWLFDQFYKHMIYIVSIAIC 34


>SB_4071| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 77

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -2

Query: 288 NVSMKKRFLLSGNNFLFVKFYVGIVYIYLMAIC 190
           N  +K  ++L  N +LF +FY  ++YI  +AIC
Sbjct: 2   NSKLKLNYVLWLNTWLFDQFYKHMIYIVSIAIC 34


>SB_46196| Best HMM Match : DUF1029 (HMM E-Value=3.6)
          Length = 448

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -2

Query: 288 NVSMKKRFLLSGNNFLFVKFYVGIVYIYLMAIC 190
           N  +K  ++L  N +LF +FY  ++YI  +AIC
Sbjct: 282 NSKLKLNYVLWLNTWLFDQFYKHMIYIVSIAIC 314


>SB_29165| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 97

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -2

Query: 288 NVSMKKRFLLSGNNFLFVKFYVGIVYIYLMAIC 190
           N  +K  ++L  N +LF +FY  ++YI  +AIC
Sbjct: 2   NSKLKLNYVLWLNTWLFDQFYKHMIYIVSIAIC 34


>SB_13345| Best HMM Match : Hormone_4 (HMM E-Value=3.9)
          Length = 448

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -2

Query: 288 NVSMKKRFLLSGNNFLFVKFYVGIVYIYLMAIC 190
           N  +K  ++L  N +LF +FY  ++YI  +AIC
Sbjct: 282 NSKLKLNYVLWLNTWLFDQFYKHMIYIVSIAIC 314


>SB_11442| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 170

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -2

Query: 288 NVSMKKRFLLSGNNFLFVKFYVGIVYIYLMAIC 190
           N  +K  ++L  N +LF +FY  ++YI  +AIC
Sbjct: 2   NSKLKLNYVLWLNTWLFDQFYKHMIYIVSIAIC 34


>SB_7165| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 218

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -2

Query: 288 NVSMKKRFLLSGNNFLFVKFYVGIVYIYLMAIC 190
           N  +K  ++L  N +LF +FY  ++YI  +AIC
Sbjct: 2   NSKLKLNYVLWLNTWLFDQFYKHMIYIVSIAIC 34


>SB_1411| Best HMM Match : PT (HMM E-Value=0.079)
          Length = 131

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 471 PSTSRSHDHDPSEGPLDVPSDEPIQIDLAGPLRYDNDD 584
           PS  +     P  GP+  PSD+PI     GP+ + +DD
Sbjct: 4   PSAIQVTTFQPGFGPICQPSDDPIFQPGVGPICHPSDD 41


>SB_54020| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2431

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
 Frame = +3

Query: 465 DLPSTSRSHDH----DPSEGPLDVPSDEPIQIDLAGPLRYDNDDSNDTVLNIIINGPGHL 632
           DLPST+ +  H    D +  P D     P++ + AGP   D+D   +   + ++ G    
Sbjct: 678 DLPSTADNTSHMETTDEASSPHDPARSVPMETEQAGPSSADHDAKMEVDDSTLVPGTS-T 736

Query: 633 PAQ 641
           PAQ
Sbjct: 737 PAQ 739


>SB_22307| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 713

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -2

Query: 288 NVSMKKRFLLSGNNFLFVKFYVGIVYIYLMAIC 190
           N  +K  ++L  N +LF +FY  ++Y   +AIC
Sbjct: 547 NSKLKLNYVLCLNTWLFDQFYKHMIYTVSIAIC 579


>SB_1171| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1415

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 20/73 (27%), Positives = 33/73 (45%)
 Frame = +3

Query: 384 GTESPGSPNIFEEPEQSFAAAENDNHIDLPSTSRSHDHDPSEGPLDVPSDEPIQIDLAGP 563
           G  S  +PNI     Q   ++ +  H  + +T    +   S G      D  +QID+   
Sbjct: 618 GKFSIDTPNIAVHT-QKIKSSFHGIHTTVTTTDNKINITTSTGTTLGARDPQVQIDMPSS 676

Query: 564 LRYDNDDSNDTVL 602
           +  +ND SN+TV+
Sbjct: 677 MFPNNDTSNETVI 689


>SB_36147| Best HMM Match : Keratin_B2 (HMM E-Value=1.7)
          Length = 533

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 500 IVIMASTSRRQIYVVVILCCCEAL 429
           ++ M STSR  +YV+ I C C  +
Sbjct: 14  LISMCSTSRAHVYVLYIACSCRCV 37


>SB_35350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 626

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +3

Query: 375 QSQGTESPGSPNIFEEP-EQSFAAAENDNHIDLPSTSRSHDHDP 503
           ++   ES  S N F+   E S  A+EN + I+L       DHDP
Sbjct: 124 KANSDESDASENTFDSTGEASNEASENVSEIELVFKPHPKDHDP 167


>SB_21820| Best HMM Match : DUF622 (HMM E-Value=2.7)
          Length = 472

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/56 (28%), Positives = 24/56 (42%)
 Frame = +3

Query: 348 RKMSQYPTAQSQGTESPGSPNIFEEPEQSFAAAENDNHIDLPSTSRSHDHDPSEGP 515
           +KM+Q    +S  +E+P          Q+      DN  D  +  + HD DPS  P
Sbjct: 226 KKMTQEKDDKSNSSENPKLVATSPSMAQTLGRTTRDNDKDTDNMDKGHD-DPSPSP 280


>SB_30324| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 336

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -2

Query: 573 RTSRDRPSLFVWAHRWAHLTDPRR 502
           RT   R  LF  A+RW H  +P+R
Sbjct: 75  RTKETRSMLFRSAYRWLHFENPKR 98


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,546,511
Number of Sequences: 59808
Number of extensions: 450240
Number of successful extensions: 1337
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1333
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)