Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4d21
         (416 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.06 |gln1||glutamate-ammonia ligase Gln1|Schizosaccharom...    25   3.6  
SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces pomb...    25   4.7  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   6.2  
SPAC1B3.08 |||COP9 signalosome complex subunit 12 |Schizosacchar...    24   8.2  

>SPAC23H4.06 |gln1||glutamate-ammonia ligase
           Gln1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 359

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +2

Query: 47  YTDLNVRDR-MAKFFEQMRFNYTASVLVMLDCRESTLRNLNVW 172
           Y DL    + MA++     FN+  S  + LD + S++  L VW
Sbjct: 19  YADLPQNGKVMAEYIWIDGFNHLRSKTMTLDAKPSSIDQLRVW 61


>SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 7/27 (25%), Positives = 19/27 (70%)
 Frame = +2

Query: 188 VEMFQVFYYLLYNKCDATNLSFCFILS 268
           V++FQ++ Y +Y+    +N + C++++
Sbjct: 7   VQLFQLYNYSVYSNGTISNFTNCYLIN 33


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 11/44 (25%), Positives = 17/44 (38%)
 Frame = +2

Query: 128  MLDCRESTLRNLNVWY*LLLVEMFQVFYYLLYNKCDATNLSFCF 259
            +L C    +  LN WY     + F  F+Y    K +   L   +
Sbjct: 4511 ILPCSAGQMYALNAWYNTEKKKYFHTFFYTTEEKIELLKLKLAW 4554


>SPAC1B3.08 |||COP9 signalosome complex subunit 12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 423

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +1

Query: 259 YFVHLNS*RQRSPNSLLLKN*SQPFGGSAKFCRFFC*PAEFSINE 393
           YF  +NS   RS + LL KN S P+G +      F  P  +S ++
Sbjct: 11  YFSTINSAVARSNSVLLAKNLSIPWGKTLTSVLNFDIPGTYSSDD 55


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,588,972
Number of Sequences: 5004
Number of extensions: 28505
Number of successful extensions: 34
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)