Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4d21
         (416 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.    23   1.4  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    23   1.4  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    20   9.7  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    20   9.7  

>EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.
          Length = 200

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +2

Query: 86  FEQMRFNYTASVLVMLDCRESTLRNLN 166
           F+Q++   T+    +LDC +S + NL+
Sbjct: 19  FDQLKTKKTSFDSTLLDCIQSGIENLD 45


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +2

Query: 86  FEQMRFNYTASVLVMLDCRESTLRNLN 166
           F+Q++   T+    +LDC +S + NL+
Sbjct: 35  FDQLKTKKTSFDSTLLDCIQSGIENLD 61


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +1

Query: 70  PNGQVF*TDAI*LYSVCPCNARL 138
           PNG V  +  I L   CP N +L
Sbjct: 144 PNGSVLYSIRISLTLSCPMNLKL 166


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +1

Query: 70  PNGQVF*TDAI*LYSVCPCNARL 138
           PNG V  +  I L   CP N +L
Sbjct: 144 PNGSVLYSIRISLTLSCPMNLKL 166


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,044
Number of Sequences: 438
Number of extensions: 1812
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10626762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)