Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4d07
         (722 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0965 + 21915842-21916906                                         30   1.6  
03_02_0522 + 9103357-9103437,9103538-9103592,9103687-9103739,910...    29   4.9  
08_01_0612 + 5378190-5378251,5378926-5379244,5379381-5379671,538...    28   8.6  

>10_08_0965 + 21915842-21916906
          Length = 354

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
 Frame = -1

Query: 665 TQANTVAAAMKAHIDIQIILNPIPASD-LSCSLLCR--FHSRINSPLLLVDSSCVLCYHS 495
           T A+++AA  K+  D  +  +     D L     CR  FHSR   P L  + SC LC  S
Sbjct: 114 TLASSLAALPKSSRDCAVCQSAFRDDDELRLLPACRHAFHSRCVDPWLRANPSCPLCRAS 173

Query: 494 LCFFH 480
           +   H
Sbjct: 174 IALPH 178


>03_02_0522 +
           9103357-9103437,9103538-9103592,9103687-9103739,
           9103832-9104060,9104149-9104284,9104448-9104496,
           9105123-9105248,9106003-9106110,9106255-9106395
          Length = 325

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
 Frame = -1

Query: 677 KQTGTQANTVAAAMKAHIDIQIILNPIPASDLSCSLLC--RFHSRINSPLLLVDSSCVLC 504
           KQ   +A+     ++  +   + L  +   DL  SL C  +FH+    P L    +C +C
Sbjct: 203 KQDRFKADATDNTLEDELTCSVCLEQVVVGDLLRSLPCLHQFHANCIDPWLRQQGTCPVC 262

Query: 503 YH 498
            H
Sbjct: 263 KH 264


>08_01_0612 +
           5378190-5378251,5378926-5379244,5379381-5379671,
           5380520-5380768,5380843-5380967,5381487-5381585,
           5381668-5382352
          Length = 609

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +3

Query: 186 VSARGFPERRAEKTQALQARKEPKVREVQRDCKGKCATSI 305
           + ARG+P  +  K   L   K P+ +E   +  G CA  +
Sbjct: 483 MEARGYPADKKAKNILLSLAKTPEEQEEANELTGNCAIQL 522


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,269,629
Number of Sequences: 37544
Number of extensions: 240210
Number of successful extensions: 611
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)