Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4d07
         (722 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22840| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                31   1.2  
SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                29   5.0  
SB_22067| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_48433| Best HMM Match : Ion_trans (HMM E-Value=6.1e-26)             28   8.8  
SB_50148| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  
SB_41425| Best HMM Match : DCX (HMM E-Value=8.6e-06)                   28   8.8  

>SB_22840| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 4002

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +1

Query: 211  GGRKKLRHCKLGRSRRCGRYRG 276
            GG+  +R+ K GRSR+C  Y+G
Sbjct: 1764 GGKAHIRYRKYGRSRKCRNYKG 1785


>SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 7381

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -3

Query: 156  SFINHFSNLFYMLWQFRIAVR-PLYGCIGYFHRMVD*RI 43
            +FI  F  ++   WQ RIA+R   YGC G   + V+ R+
Sbjct: 6041 AFIARFVRVYPRSWQGRIAMRVEFYGCAGENSKPVNDRV 6079


>SB_22067| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 705

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = +1

Query: 568 SKLQLRSDAGIGFKMICMSMCAFIAAATVLACVPVCLRETSVKFMSCL 711
           S L +    G    M C+ +     +AT+++C+ V +   S   MSCL
Sbjct: 7   SCLDVLVSTGSATLMSCLDVLVSTGSATLMSCLDVLVSTGSATLMSCL 54



 Score = 27.9 bits (59), Expect = 8.8
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +1

Query: 610 MICMSMCAFIAAATVLACVPVCLRETSVKFMSCL 711
           M C+ +     +AT+++C+ V +   S   MSCL
Sbjct: 6   MSCLDVLVSTGSATLMSCLDVLVSTGSATLMSCL 39


>SB_48433| Best HMM Match : Ion_trans (HMM E-Value=6.1e-26)
          Length = 1344

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +1

Query: 544 LMRLWKRHSKLQLRSDAGIGFKMICMSMCAFIAAATVLACV 666
           L+RL +   KL   S+ G+   ++C+ MC+F   A  LAC+
Sbjct: 537 LLRLVRVARKLDHYSEYGMA--VLCLLMCSFALLAHWLACI 575


>SB_50148| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 606

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 17/68 (25%), Positives = 29/68 (42%)
 Frame = -1

Query: 689 EVSLKQTGTQANTVAAAMKAHIDIQIILNPIPASDLSCSLLCRFHSRINSPLLLVDSSCV 510
           E   + T + A+  A  +     +  I     + D  C+L CR  + + +PL   D    
Sbjct: 232 EAQFRMTASDASFYAGIITVPGGVLGITKLGGSMDAPCNLGCRCRAEVYAPLCTEDDQ-- 289

Query: 509 LCYHSLCF 486
           + Y+S CF
Sbjct: 290 MTYYSACF 297


>SB_41425| Best HMM Match : DCX (HMM E-Value=8.6e-06)
          Length = 1098

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +1

Query: 610  MICMSMCAFIAAATVLACVPVCLRETSVKFMSCL 711
            M C+ +     +AT+++C+ V +   S   MSCL
Sbjct: 973  MSCLDVLVSTGSATLMSCLDVLVSTGSATLMSCL 1006


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,464,495
Number of Sequences: 59808
Number of extensions: 278175
Number of successful extensions: 860
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)