Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4d04
         (690 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11B10.07c |||CDC50 domain protein|Schizosaccharomyces pombe|...   124   1e-29
SPBC1773.11c |mug89||CDC50 domain protein|Schizosaccharomyces po...    79   5e-16
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|...    27   1.9  
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ...    27   1.9  
SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomy...    27   2.6  
SPCC576.19c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual        26   4.5  
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    26   5.9  
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    25   7.8  
SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces pomb...    25   7.8  

>SPBC11B10.07c |||CDC50 domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 371

 Score =  124 bits (299), Expect = 1e-29
 Identities = 75/177 (42%), Positives = 92/177 (51%), Gaps = 14/177 (7%)
 Frame = +3

Query: 183 RRPAESAFKQQRLPAWQPILTAGTVLPTFFVIGIAFIPVGIGLLYFSDEVKEHVIDYTYC 362
           +RP +S F QQ LPAWQ I T  TVLP  F++GI F P+G G+   S  VKE  IDYT C
Sbjct: 16  KRPDKSRFVQQTLPAWQFIFTPWTVLPLLFLLGIVFAPLGAGMFVASRRVKELRIDYTDC 75

Query: 363 MK--DDMN---VTCADFLKNNTEEIC--------TCHLPFNLTEDFKGEVYFYYGLTNYY 503
           M   D+      T  +F   N + +          C L F + E+    V+ +Y L N+Y
Sbjct: 76  MNIGDEFKQVPSTNIEFQYKNVKNVTAMWKSSGDVCTLRFQIPEEMTSPVFAFYRLKNFY 135

Query: 504 QNHRRYVKSRDDNQLLGRLSLTPSSDCDPFAR-AEENGVMKPIAPCGAIANSLFNDT 671
           QNHRRY  S D  QLLG            F +  E N   KP  PCG IANSLFND+
Sbjct: 136 QNHRRYTVSADMFQLLGEARTVAQLKSYGFCKPLEANEEGKPYYPCGIIANSLFNDS 192


>SPBC1773.11c |mug89||CDC50 domain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 396

 Score = 79.4 bits (187), Expect = 5e-16
 Identities = 38/72 (52%), Positives = 50/72 (69%), Gaps = 2/72 (2%)
 Frame = +3

Query: 153 SDTSEQN--VKSRRPAESAFKQQRLPAWQPILTAGTVLPTFFVIGIAFIPVGIGLLYFSD 326
           SDT+      K+R P  ++F+QQR+ +WQP+LT   VLP FFV+GI F P+G GLLY S 
Sbjct: 10  SDTASNGPVAKTRAPPNTSFRQQRIKSWQPLLTPKIVLPLFFVLGIIFGPLGGGLLYASS 69

Query: 327 EVKEHVIDYTYC 362
            V+E V+DYT C
Sbjct: 70  IVQELVVDYTDC 81



 Score = 74.1 bits (174), Expect = 2e-14
 Identities = 39/87 (44%), Positives = 52/87 (59%), Gaps = 4/87 (4%)
 Frame = +3

Query: 429 CHLPFNLTEDFKGEVYFYYGLTNYYQNHRRYVKSRDDNQLLGRLSLT----PSSDCDPFA 596
           C + F +    K  ++ YY LTN++QNHRRY KS D+ QL G ++LT       +C P  
Sbjct: 134 CIIRFTVPSVLKAPIFIYYRLTNFFQNHRRYAKSVDEKQLQG-VALTADEVKGGNCFPLE 192

Query: 597 RAEENGVMKPIAPCGAIANSLFNDTLT 677
             E++   KP  PCG IANSLFNDT +
Sbjct: 193 VNEDD---KPYYPCGLIANSLFNDTFS 216


>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = -3

Query: 238 IGCHAGRRCCLKADSAGRLDFT 173
           IGCH  RRC    DSA  +D T
Sbjct: 6   IGCHTPRRCNRFIDSAALIDCT 27


>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 905

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
 Frame = +3

Query: 507 NHR--RYVKSRDDNQLLGRLSLTPSSDCDPFARAEENGVMKPIAPCGAIANSLFNDTLTL 680
           NHR  +   S +   LLG    +P+    P  R  +N V+ P+A    I N    D  T 
Sbjct: 808 NHRSIKIEVSDEAKDLLGSAGYSPAYGARPLNRVIQNQVLNPMAV--LILNGQLRDKETA 865

Query: 681 HSV 689
           H V
Sbjct: 866 HVV 868


>SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +3

Query: 465 GEVYFYYGLTNYYQNHRRYVKSRDDNQLLGRLSLTPSSDCDPFAR 599
           G  +FY   T ++     Y  + DD+   G L + P SD D  +R
Sbjct: 28  GRYFFYENGTRFFLKGIAYQPNVDDSDTEGTLFVDPLSDGDACSR 72


>SPCC576.19c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 119

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -1

Query: 531 WILHIVYDSGNN-WSVHNRNKLLL*SPQ*D*REDDKCIFLQC 409
           W L+I  +  NN +S    + +LL   Q D  +  KC+FL C
Sbjct: 21  WFLYISLELFNNMYSPFRSSSVLLSGAQSDIPKVGKCLFLPC 62


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 22/81 (27%), Positives = 33/81 (40%)
 Frame = +3

Query: 417 EICTCHLPFNLTEDFKGEVYFYYGLTNYYQNHRRYVKSRDDNQLLGRLSLTPSSDCDPFA 596
           E+ +  L FN       +   +  +T Y +  RR   +   +    RLSLTPSS   P  
Sbjct: 366 EVLSTFLSFNECASQDKKNCVFSRVTKYIKAARRASTANRVSVAKDRLSLTPSS--TPST 423

Query: 597 RAEENGVMKPIAPCGAIANSL 659
            +    + +P  P    A SL
Sbjct: 424 PSPAESLPQPSNPTSVYAKSL 444


>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 546

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +3

Query: 66  CESLIYWFYLVIPKKR 113
           C   IYW YL + KKR
Sbjct: 391 CTPFIYWHYLKVNKKR 406


>SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 347

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/22 (45%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
 Frame = +3

Query: 459 FKGEV--YFYYGLTNYYQNHRR 518
           F G +  Y +Y LT+Y+ +HRR
Sbjct: 272 FSGAILGYVFYDLTHYFLHHRR 293


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,663,114
Number of Sequences: 5004
Number of extensions: 53212
Number of successful extensions: 162
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)