Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte4d04
(690 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0168 - 26115947-26116007,26116109-26116398,26116934-261172... 129 2e-30
06_03_1040 + 27082978-27083086,27083574-27083632,27083759-270838... 124 5e-29
09_06_0274 + 21967740-21968230,21968411-21968550,21968711-219689... 119 2e-27
02_01_0549 - 4038699-4038753,4039225-4039514,4039673-4039970,404... 107 6e-24
03_01_0137 - 1082786-1082846,1083850-1084142,1084250-1084550,108... 100 9e-22
03_06_0210 + 32386438-32386452,32386543-32386617,32386716-323868... 97 2e-20
01_01_0768 - 5935319-5935417,5935536-5935583,5935721-5935780,593... 32 0.37
11_05_0078 - 18906900-18907082,18907104-18907337,18907429-189076... 31 0.86
02_02_0364 - 9457747-9458043,9459815-9459952,9460072-9460141,946... 31 0.86
02_04_0616 + 24416924-24418162 31 1.1
06_03_1293 + 29077525-29078120,29078592-29078645,29078819-290789... 30 2.0
12_01_0589 + 4801332-4801573,4801696-4801815,4802540-4802927,480... 29 4.6
02_05_0953 - 33027007-33029079 28 6.1
03_05_0533 - 25332015-25332145,25332231-25332449,25332595-253327... 28 8.0
>05_06_0168 -
26115947-26116007,26116109-26116398,26116934-26117234,
26117333-26117403,26118067-26118174,26118700-26118774,
26118901-26118959,26119119-26119179,26120979-26120990
Length = 345
Score = 129 bits (311), Expect = 2e-30
Identities = 78/185 (42%), Positives = 104/185 (56%), Gaps = 4/185 (2%)
Frame = +3
Query: 135 QTMATSSDTSEQNV--KSRRPAESAFKQQRLPAWQPILTAGTVLPTFFVIGIAFIPVGIG 308
+TM+TS S+ +S +P S F QQ LPAW+P+ T G V+ F +IGI FIP+G+
Sbjct: 3 ETMSTSGSESDSVAAKRSMKPKYSKFTQQELPAWKPLYTPGIVIGAFSLIGIIFIPIGLV 62
Query: 309 LLYFSDEVKEHVIDYT-YCMKDDMNVTCADFLKN-NTEEICTCHLPFNLTEDFKGEVYFY 482
+ S EV E V Y C+ + V F+++ T++ CT + + KG + Y
Sbjct: 63 SIAASQEVVELVDKYDGECVTANDKV---GFIQDTKTDKACT--RTITVPKPMKGPIQVY 117
Query: 483 YGLTNYYQNHRRYVKSRDDNQLLGRLSLTPSSDCDPFARAEENGVMKPIAPCGAIANSLF 662
Y L N+YQNHRRYVKSR D QL + + CDP A +E PI PCG IA SLF
Sbjct: 118 YQLENFYQNHRRYVKSRSDKQLRSKEFSSVIKTCDPEAISEGGA---PIVPCGLIAWSLF 174
Query: 663 NDTLT 677
NDT T
Sbjct: 175 NDTFT 179
>06_03_1040 +
27082978-27083086,27083574-27083632,27083759-27083833,
27083908-27084024,27084207-27084277,27084432-27084732,
27084949-27085238,27085779-27085833
Length = 358
Score = 124 bits (300), Expect = 5e-29
Identities = 71/166 (42%), Positives = 96/166 (57%), Gaps = 2/166 (1%)
Frame = +3
Query: 180 SRRPAESAFKQQRLPAWQPILTAGTVLPTFFVIGIAFIPVGIGLLYFSDEVKEHVIDYT- 356
++ P S F QQ LPA +PILT V+ FF++G+ F+PVG+ L + V E V Y
Sbjct: 32 TKMPKYSKFTQQELPACKPILTPKWVVSVFFLVGVIFVPVGVVSLLAAQNVVEIVDRYDD 91
Query: 357 YCMKDDMNVTCADFLKN-NTEEICTCHLPFNLTEDFKGEVYFYYGLTNYYQNHRRYVKSR 533
C+ +M +++N N + CT L +TED ++ YY L N+YQNHRRYVKSR
Sbjct: 92 ACVPANMTDNKLAYIQNPNISKECTRTL--TITEDMNQPIFVYYQLDNFYQNHRRYVKSR 149
Query: 534 DDNQLLGRLSLTPSSDCDPFARAEENGVMKPIAPCGAIANSLFNDT 671
+D QL +S C+P + +G KPI PCG IA SLFNDT
Sbjct: 150 NDGQLRDAAKANQTSACEP-EKTTADG--KPIVPCGLIAWSLFNDT 192
>09_06_0274 + 21967740-21968230,21968411-21968550,21968711-21968905,
21969524-21969652,21970063-21970218,21970507-21970589,
21972229-21972433,21972601-21972805,21973059-21973194,
21973990-21974164,21974470-21974528,21974642-21974716,
21974804-21974920,21975010-21975080,21975170-21975473,
21975721-21976086,21976404-21976514
Length = 1005
Score = 119 bits (287), Expect = 2e-27
Identities = 73/178 (41%), Positives = 99/178 (55%), Gaps = 2/178 (1%)
Frame = +3
Query: 144 ATSSDTSEQNVKSR-RPAESAFKQQRLPAWQPILTAGTVLPTFFVIGIAFIPVGIGLLYF 320
++ D S VK R RP F QQ L A +PIL TV+ +G+ FIP+G+ +
Sbjct: 621 SSGEDGSAAAVKKRNRPKYHRFTQQELQACKPILIPQTVILVLVFVGLIFIPIGLACIAA 680
Query: 321 SDEVKEHVIDY-TYCMKDDMNVTCADFLKNNTEEICTCHLPFNLTEDFKGEVYFYYGLTN 497
S++V E V Y T C+ +M F++N++ + TC F + +D K +Y YY L
Sbjct: 681 SNKVVELVDRYDTKCVPRNMLRNKVAFIQNSSIDK-TCTRVFKVPKDMKKPIYIYYQLDK 739
Query: 498 YYQNHRRYVKSRDDNQLLGRLSLTPSSDCDPFARAEENGVMKPIAPCGAIANSLFNDT 671
+YQNHRRYVKS +D QL + + C P A A NG +PI PCG IA SLFNDT
Sbjct: 740 FYQNHRRYVKSLNDMQLRNPKKVADTQYCSPEATA--NG--RPIVPCGLIAWSLFNDT 793
>02_01_0549 -
4038699-4038753,4039225-4039514,4039673-4039970,
4040779-4040849,4040966-4041079,4041166-4041240,
4041347-4041405,4041870-4041912
Length = 334
Score = 107 bits (258), Expect = 6e-24
Identities = 63/158 (39%), Positives = 83/158 (52%)
Frame = +3
Query: 198 SAFKQQRLPAWQPILTAGTVLPTFFVIGIAFIPVGIGLLYFSDEVKEHVIDYTYCMKDDM 377
S F QQ LPA +PILT V+ F ++G+ F+P+G+ L S +V E V Y
Sbjct: 16 SKFTQQELPACKPILTPKWVISVFVLVGVIFVPIGLVSLKASRKVVEIVDRYDDACVPAN 75
Query: 378 NVTCADFLKNNTEEICTCHLPFNLTEDFKGEVYFYYGLTNYYQNHRRYVKSRDDNQLLGR 557
+++N T C + +D ++ YY L N+YQNHRRYVKSR D QL
Sbjct: 76 TTDKLAYIQNPTISK-NCRRTLKVPKDMDAPIFVYYQLDNFYQNHRRYVKSRSDAQLRDP 134
Query: 558 LSLTPSSDCDPFARAEENGVMKPIAPCGAIANSLFNDT 671
+S CDP A NG+ I PCG IA S+FNDT
Sbjct: 135 KKANDTSTCDPEGTA--NGM--AIVPCGLIAWSIFNDT 168
>03_01_0137 -
1082786-1082846,1083850-1084142,1084250-1084550,
1084792-1084862,1085008-1085115,1085205-1085279,
1085298-1085440,1087848-1088097
Length = 433
Score = 100 bits (240), Expect = 9e-22
Identities = 57/143 (39%), Positives = 80/143 (55%), Gaps = 1/143 (0%)
Frame = +3
Query: 255 VLPTFFVIGIAFIPVGIGLLYFSDEVKEHVIDY-TYCMKDDMNVTCADFLKNNTEEICTC 431
V+ TF +IGI F+P+G+ L S E+ E V Y T C+ + F++N T+ TC
Sbjct: 132 VVATFLLIGIIFVPIGLASLSASQEIVELVDRYDTNCVS---TLDKVGFIQN-TDTDKTC 187
Query: 432 HLPFNLTEDFKGEVYFYYGLTNYYQNHRRYVKSRDDNQLLGRLSLTPSSDCDPFARAEEN 611
+ + K + YY + ++YQNHRRYVKSR D QL + ++ + DCDP +
Sbjct: 188 TRTLTVPKHMKSPIQIYYQIGDFYQNHRRYVKSRSDKQLRYKNAVHLTKDCDPEGNTVDG 247
Query: 612 GVMKPIAPCGAIANSLFNDTLTL 680
PI PCG IA SLFNDT T+
Sbjct: 248 A---PIIPCGLIAWSLFNDTYTI 267
>03_06_0210 +
32386438-32386452,32386543-32386617,32386716-32386832,
32387006-32387076,32387202-32387496,32387594-32387883,
32388122-32388137
Length = 292
Score = 96.7 bits (230), Expect = 2e-20
Identities = 59/146 (40%), Positives = 81/146 (55%), Gaps = 2/146 (1%)
Frame = +3
Query: 240 LTAGTVLPTFFVIGIAFIPVGIGLLYFSDEVKEHVIDYTY-CMKDDMNVTCADFLKNNT- 413
+T G V+ F +IG+ F+PVG+ L+ S+ V E Y C+ + ++K+++
Sbjct: 1 MTPGCVITIFLMIGVTFVPVGLVCLHASNHVAEIAHRYDIDCVPNAYKRNRQAYIKDSSI 60
Query: 414 EEICTCHLPFNLTEDFKGEVYFYYGLTNYYQNHRRYVKSRDDNQLLGRLSLTPSSDCDPF 593
+ CT + + +Y YY L N+YQNHRRYVKSR D QL T SS CDP
Sbjct: 61 SKNCTQEVKVKYL--MRAPIYVYYELDNFYQNHRRYVKSRSDKQLRYGQKYTHSS-CDPI 117
Query: 594 ARAEENGVMKPIAPCGAIANSLFNDT 671
R +G+ PI PCG IA SLFNDT
Sbjct: 118 ER--NDGL--PIVPCGLIAWSLFNDT 139
>01_01_0768 -
5935319-5935417,5935536-5935583,5935721-5935780,
5935884-5935996,5936082-5936154,5936895-5936939,
5937020-5937133,5937227-5937253,5937963-5938247
Length = 287
Score = 32.3 bits (70), Expect = 0.37
Identities = 19/47 (40%), Positives = 25/47 (53%)
Frame = +3
Query: 285 AFIPVGIGLLYFSDEVKEHVIDYTYCMKDDMNVTCADFLKNNTEEIC 425
A +PV L +++ KE VI YC D VT D +KN EE+C
Sbjct: 208 AILPVNPKFLPRTEDEKEMVIRTVYCTNIDKKVTQLD-VKNFFEELC 253
>11_05_0078 -
18906900-18907082,18907104-18907337,18907429-18907653,
18907739-18907909,18907994-18908109,18908215-18908369,
18908450-18908573,18909007-18909107,18909215-18909297,
18909383-18909607,18909694-18909810,18910488-18910640
Length = 628
Score = 31.1 bits (67), Expect = 0.86
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = +3
Query: 372 DMNVTCADFLKNNTEEICTCHLPFNLTEDFKGEVYFYYGLTNYYQ 506
D+N+ C D +KN+ +E+ TCH + E Y +T++++
Sbjct: 569 DINILCVD-MKNSDDELMTCHFDPCIGEQALALAMAYQSVTDHHK 612
>02_02_0364 -
9457747-9458043,9459815-9459952,9460072-9460141,
9460928-9460995,9462451-9462582
Length = 234
Score = 31.1 bits (67), Expect = 0.86
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = +3
Query: 255 VLPTFFVIGIAFIPVGIGLLYFSDEVKEHVIDYTYCMKDDMNVTCADF 398
VLP+FF + + IGL + D+ KE V DY + D+++T ++
Sbjct: 64 VLPSFFYWTVLAFELCIGLTCYQDDTKE-VHDYLKSLCPDLHITRGEY 110
>02_04_0616 + 24416924-24418162
Length = 412
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Frame = +3
Query: 528 SRDDNQLLGRLSL----TPSSDCDPFARAEENGVMKPIAPCGAIANSLFNDTLTLH 683
SR N++ RL L P D D + EE G P AIA F+DT+ +H
Sbjct: 279 SRGHNRVCQRLFLLDLAAPDDDYDDDSTPEETGETDPHVSLHAIAGVRFSDTMQVH 334
>06_03_1293 +
29077525-29078120,29078592-29078645,29078819-29078970,
29079362-29079639
Length = 359
Score = 29.9 bits (64), Expect = 2.0
Identities = 22/72 (30%), Positives = 35/72 (48%)
Frame = +3
Query: 318 FSDEVKEHVIDYTYCMKDDMNVTCADFLKNNTEEICTCHLPFNLTEDFKGEVYFYYGLTN 497
F D V+ H+ID D N+ D+ +T + + P +T D +GEV + N
Sbjct: 29 FYDTVEVHIIDDD--SDGDANIH-KDYSMEDTSKHLVMYNP-EITYDKQGEVEVTEPIDN 84
Query: 498 YYQNHRRYVKSR 533
Y ++RY+K R
Sbjct: 85 YTSLNQRYMKPR 96
>12_01_0589 +
4801332-4801573,4801696-4801815,4802540-4802927,
4803528-4803865,4804514-4804598
Length = 390
Score = 28.7 bits (61), Expect = 4.6
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = +3
Query: 510 HRRYVKSRDDNQLLGRLSLTPSSDCDPFARAEENGVMKPIAPCGAIANSLFNDTLTLH 683
H++ + + + L L+ TP + D + EE G AIA FNDT+ +H
Sbjct: 241 HQQQIAEEEKHLFLLNLA-TPDDNNDDDSTPEETGGTNTHVSLHAIAGVRFNDTMQVH 297
>02_05_0953 - 33027007-33029079
Length = 690
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Frame = +3
Query: 330 VKEHVIDYTYCMKDDMNVTCA--DFLKNNTEEI 422
++ H+ Y C +DD N +CA D L E I
Sbjct: 168 IRAHIASYKVCWRDDGNASCATSDILAGMNEAI 200
>03_05_0533 -
25332015-25332145,25332231-25332449,25332595-25332754,
25332973-25333025,25334998-25335433
Length = 332
Score = 27.9 bits (59), Expect = 8.0
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = -1
Query: 570 ELMTGGLKADCHPWILHIVYDSGNNWSVHNRNKLLL 463
+L+ G + W+ VY SG +VH++N L+
Sbjct: 188 KLLAGSVHVQSFDWVSPSVYGSGGKRAVHSKNTKLV 223
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,104,856
Number of Sequences: 37544
Number of extensions: 304362
Number of successful extensions: 766
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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