Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4d04
         (690 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42950| Best HMM Match : CDC50 (HMM E-Value=0)                      197   6e-51
SB_44429| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_5902| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.5  
SB_51502| Best HMM Match : TPR_2 (HMM E-Value=0)                       29   3.6  
SB_56223| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_44728| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_25763| Best HMM Match : MgtE_N (HMM E-Value=1.9)                    28   6.2  
SB_1021| Best HMM Match : Sec2p (HMM E-Value=1.9)                      28   6.2  

>SB_42950| Best HMM Match : CDC50 (HMM E-Value=0)
          Length = 394

 Score =  197 bits (481), Expect = 6e-51
 Identities = 93/175 (53%), Positives = 121/175 (69%), Gaps = 2/175 (1%)
 Frame = +3

Query: 153 SDTSEQNVKSRRPAESAFKQQRLPAWQPILTAGTVLPTFFVIGIAFIPVGIGLLYFSDEV 332
           +D++E+   SR+P+ +AFKQQRL AWQPILTA T LP FF++G+ F+P+G  LL  SD V
Sbjct: 2   ADSAEKT--SRKPSNTAFKQQRLKAWQPILTASTALPVFFIVGVVFVPIGAILLVASDGV 59

Query: 333 KEHVIDYTYCMKDDMNVTCADFLK--NNTEEICTCHLPFNLTEDFKGEVYFYYGLTNYYQ 506
           +E VI+YT C     N  C  F K  NN+ ++C C + F+L   F G+VY YYG++N+YQ
Sbjct: 60  QEKVIEYTKCNSTTTNEGCDAFFKKVNNSGKVCHCKIDFSLASKFSGDVYIYYGMSNFYQ 119

Query: 507 NHRRYVKSRDDNQLLGRLSLTPSSDCDPFARAEENGVMKPIAPCGAIANSLFNDT 671
           NHRRYV+SRDD QL G+L    + DC PF    +N    P APCGAIANSLFND+
Sbjct: 120 NHRRYVRSRDDLQLNGQLQTPVNKDCAPF---NKNASGTPTAPCGAIANSLFNDS 171


>SB_44429| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 79

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = -2

Query: 545 LIVIPGFYISSMILVIIGQSIIEI--NFSFEVLSKIEGKMTSAYFF 414
           ++ +PGF + SMI V I   I++   N   ++   +  K TS YFF
Sbjct: 17  VVEVPGFSLGSMIGVYIKVQILDTGSNLHLKIQVLVGSKATSLYFF 62


>SB_5902| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 454

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = -2

Query: 545 LIVIPGFYISSMILVIIGQSIIEI--NFSFEVLSKIEGKMTSAYFF 414
           ++ +PGF + SMI V I   I++   N   ++   +  K TS YFF
Sbjct: 315 VVEVPGFSLGSMIGVYIKVQILDTGSNLHLKIQVLVGSKATSLYFF 360


>SB_51502| Best HMM Match : TPR_2 (HMM E-Value=0)
          Length = 1161

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +3

Query: 441 FNLTEDFKGEVYFYYGLTNYYQNHRRYVKSRDDNQ 545
           F  T D  G+   Y+G+ N Y++H +Y  + ++ Q
Sbjct: 248 FQKTGDVSGQAKAYHGMGNVYRSHGKYEDAMNNYQ 282


>SB_56223| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1719

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +3

Query: 516  RYVKSRDDNQLLGRLSLTPSSDCDPFARAEENGVMKPIAP 635
            R   S+D++QLL  LS  PSS      +A++    KP+ P
Sbjct: 1118 RSSSSKDESQLLASLSSVPSSGSSS-RKAKDGACHKPVRP 1156


>SB_44728| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 83

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +3

Query: 534 DDNQLLGRLSLTPSSDCDPFAR 599
           DDN  +GRL  TP +D +P AR
Sbjct: 3   DDNIEIGRLMATPVADANPIAR 24


>SB_25763| Best HMM Match : MgtE_N (HMM E-Value=1.9)
          Length = 483

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = -1

Query: 606 LQHVQ-MDHNQKMELMTGGLKADCHP-WILHIVYDSGNNWSVHN 481
           L+H+Q + H Q++E      + D H  W  H  + + NNWS HN
Sbjct: 280 LEHLQQLKHLQQLEYPQ---QLDTHNNWSTHNNWSTYNNWSTHN 320


>SB_1021| Best HMM Match : Sec2p (HMM E-Value=1.9)
          Length = 451

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +3

Query: 570 PSSDCDPFARAEENGVMKPIAPCGAIANSLFNDTLTLHSV 689
           PS+D      A+EN +MKP AP     N+L N  + + ++
Sbjct: 291 PSADAAGLTTAKENPLMKPQAPLLGSDNTLGNSIVHMPNI 330


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,472,786
Number of Sequences: 59808
Number of extensions: 389626
Number of successful extensions: 1143
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1139
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)