Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte4d04
(690 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL080250-4|CAI19900.1| 361|Homo sapiens transmembrane protein 3... 195 1e-49
AK001718-1|BAA91859.1| 361|Homo sapiens protein ( Homo sapiens ... 195 1e-49
BC009006-1|AAH09006.1| 325|Homo sapiens TMEM30A protein protein. 105 2e-42
BC113559-1|AAI13560.1| 351|Homo sapiens transmembrane protein 3... 150 5e-36
BC101726-1|AAI01727.1| 351|Homo sapiens transmembrane protein 3... 150 5e-36
>AL080250-4|CAI19900.1| 361|Homo sapiens transmembrane protein 30A
protein.
Length = 361
Score = 195 bits (476), Expect = 1e-49
Identities = 97/170 (57%), Positives = 121/170 (71%), Gaps = 2/170 (1%)
Frame = +3
Query: 177 KSRRPAESAFKQQRLPAWQPILTAGTVLPTFFVIGIAFIPVGIGLLYFSDEVKEHVIDYT 356
K+RRP +AFKQQRLPAWQPILTAGTVLP FF+IG+ FIP+GIG+ S+ ++E IDYT
Sbjct: 24 KTRRPDNTAFKQQRLPAWQPILTAGTVLPIFFIIGLIFIPIGIGIFVTSNNIREIEIDYT 83
Query: 357 YCMKDDMNVTCADFLKNNTEEICTCHLPFNLTEDFKGEVYFYYGLTNYYQNHRRYVKSRD 536
+ + C L + C C + F L + F+G V+ YYGL+N+YQNHRRYVKSRD
Sbjct: 84 ---GTEPSSPCNKCLSPDVTP-CFCTINFTLEKSFEGNVFMYYGLSNFYQNHRRYVKSRD 139
Query: 537 DNQLLGRLS--LTPSSDCDPFARAEENGVMKPIAPCGAIANSLFNDTLTL 680
D+QL G S L PS +C+P+ R E+ KPIAPCGAIANS+FNDTL L
Sbjct: 140 DSQLNGDSSALLNPSKECEPYRRNED----KPIAPCGAIANSMFNDTLEL 185
>AK001718-1|BAA91859.1| 361|Homo sapiens protein ( Homo sapiens
cDNA FLJ10856 fis, clone NT2RP4001547. ).
Length = 361
Score = 195 bits (476), Expect = 1e-49
Identities = 97/170 (57%), Positives = 121/170 (71%), Gaps = 2/170 (1%)
Frame = +3
Query: 177 KSRRPAESAFKQQRLPAWQPILTAGTVLPTFFVIGIAFIPVGIGLLYFSDEVKEHVIDYT 356
K+RRP +AFKQQRLPAWQPILTAGTVLP FF+IG+ FIP+GIG+ S+ ++E IDYT
Sbjct: 24 KTRRPDNTAFKQQRLPAWQPILTAGTVLPIFFIIGLIFIPIGIGIFVTSNNIREIEIDYT 83
Query: 357 YCMKDDMNVTCADFLKNNTEEICTCHLPFNLTEDFKGEVYFYYGLTNYYQNHRRYVKSRD 536
+ + C L + C C + F L + F+G V+ YYGL+N+YQNHRRYVKSRD
Sbjct: 84 ---GTEPSSPCNKCLSPDVTP-CFCTINFTLEKSFEGNVFMYYGLSNFYQNHRRYVKSRD 139
Query: 537 DNQLLGRLS--LTPSSDCDPFARAEENGVMKPIAPCGAIANSLFNDTLTL 680
D+QL G S L PS +C+P+ R E+ KPIAPCGAIANS+FNDTL L
Sbjct: 140 DSQLNGDSSALLNPSKECEPYRRNED----KPIAPCGAIANSMFNDTLEL 185
>BC009006-1|AAH09006.1| 325|Homo sapiens TMEM30A protein protein.
Length = 325
Score = 105 bits (251), Expect(2) = 2e-42
Identities = 50/81 (61%), Positives = 61/81 (75%), Gaps = 2/81 (2%)
Frame = +3
Query: 444 NLTEDFKGEVYFYYGLTNYYQNHRRYVKSRDDNQLLGRLS--LTPSSDCDPFARAEENGV 617
N + +G V+ YYGL+N+YQNHRRYVKSRDD+QL G S L PS +C+P+ R E+
Sbjct: 73 NNIREIEGNVFMYYGLSNFYQNHRRYVKSRDDSQLNGDSSALLNPSKECEPYRRNED--- 129
Query: 618 MKPIAPCGAIANSLFNDTLTL 680
KPIAPCGAIANS+FNDTL L
Sbjct: 130 -KPIAPCGAIANSMFNDTLEL 149
Score = 87.8 bits (208), Expect(2) = 2e-42
Identities = 37/54 (68%), Positives = 46/54 (85%)
Frame = +3
Query: 177 KSRRPAESAFKQQRLPAWQPILTAGTVLPTFFVIGIAFIPVGIGLLYFSDEVKE 338
K+RRP +AFKQQRLPAWQPILTAGTVLP FF+IG+ FIP+GIG+ S+ ++E
Sbjct: 24 KTRRPDNTAFKQQRLPAWQPILTAGTVLPIFFIIGLIFIPIGIGIFVTSNNIRE 77
>BC113559-1|AAI13560.1| 351|Homo sapiens transmembrane protein 30B
protein.
Length = 351
Score = 150 bits (363), Expect = 5e-36
Identities = 82/170 (48%), Positives = 104/170 (61%), Gaps = 3/170 (1%)
Frame = +3
Query: 180 SRRPAESAFKQQRLPAWQPILTAGTVLPTFFVIGIAFIPVGIGLLYFSDEVKEHVIDYTY 359
+ +P +AF QQRLPAWQP+L+A LP FF G+AFI +G+GL Y S+ +KE DYT
Sbjct: 10 AHQPDNTAFTQQRLPAWQPLLSASIALPLFFCAGLAFIGLGLGLYYSSNGIKELEYDYTG 69
Query: 360 CMKDDMNVTCADFLKNNT-EEICTCHLPFNLTEDFKGEVYFYYGLTNYYQNHRRYVKSRD 536
CA + C+C F+L E F+G VY YY LTN+YQN+RRY SRD
Sbjct: 70 DPGTGNCSVCAAAGQGRALPPPCSCAWYFSLPELFQGPVYLYYELTNFYQNNRRYGVSRD 129
Query: 537 DNQLLGRLSLT--PSSDCDPFARAEENGVMKPIAPCGAIANSLFNDTLTL 680
D QL G S P ++C P+ R+ PIAPCGAIANSLFND+ +L
Sbjct: 130 DAQLSGLPSALRHPVNECAPYQRSAAG---LPIAPCGAIANSLFNDSFSL 176
>BC101726-1|AAI01727.1| 351|Homo sapiens transmembrane protein 30B
protein.
Length = 351
Score = 150 bits (363), Expect = 5e-36
Identities = 82/170 (48%), Positives = 104/170 (61%), Gaps = 3/170 (1%)
Frame = +3
Query: 180 SRRPAESAFKQQRLPAWQPILTAGTVLPTFFVIGIAFIPVGIGLLYFSDEVKEHVIDYTY 359
+ +P +AF QQRLPAWQP+L+A LP FF G+AFI +G+GL Y S+ +KE DYT
Sbjct: 10 AHQPDNTAFTQQRLPAWQPLLSASIALPLFFCAGLAFIGLGLGLYYSSNGIKELEYDYTG 69
Query: 360 CMKDDMNVTCADFLKNNT-EEICTCHLPFNLTEDFKGEVYFYYGLTNYYQNHRRYVKSRD 536
CA + C+C F+L E F+G VY YY LTN+YQN+RRY SRD
Sbjct: 70 DPGTGNCSVCAAAGQGRALPPPCSCAWYFSLPELFQGPVYLYYELTNFYQNNRRYGVSRD 129
Query: 537 DNQLLGRLSLT--PSSDCDPFARAEENGVMKPIAPCGAIANSLFNDTLTL 680
D QL G S P ++C P+ R+ PIAPCGAIANSLFND+ +L
Sbjct: 130 DAQLSGLPSALRHPVNECAPYQRSAAG---LPIAPCGAIANSLFNDSFSL 176
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,715,008
Number of Sequences: 237096
Number of extensions: 1692912
Number of successful extensions: 7131
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7022
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7122
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7895240574
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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