Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4d02
         (733 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC7D4.11c |sec39||secretory pathway protein Sec39 |Schizosacch...    26   4.8  
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||...    26   4.8  
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch...    25   8.4  
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy...    25   8.4  

>SPAC7D4.11c |sec39||secretory pathway protein Sec39
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 769

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 263 SNSVLLVDAQLANDLKFKVKNKLNKSNMNF 174
           S+   L    LA D+   ++NKLN S++NF
Sbjct: 273 SDDSSLYSVSLARDITEAIQNKLNFSDVNF 302


>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +1

Query: 499 RDFGGRILSVLDVRRHPDYRVDQYYPEHNLAMVKVNLPI 615
           +D  G  + +++ R HP +   QY+PE+    +K + PI
Sbjct: 508 KDERGERMEIIEKRDHPYFVGVQYHPEYLSKPLKPSPPI 546


>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 783

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = +1

Query: 235 CASTSKTELECEFPPKMEEDLSHVRRKRLTTETGLVCLE 351
           C + +   LEC +P K E+++ + +   +       CLE
Sbjct: 56  CKACASNNLECTYPVKDEKEMDYSKDYFIDLSKRYKCLE 94


>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 874

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
 Frame = +1

Query: 382 HGKHWCGGAIVSK----QWVLTAAQCFDYVTKD 468
           HG+ W  GAIV K    QW L  +   D +  D
Sbjct: 199 HGRSWRSGAIVEKKNLRQWFLKISDYSDQLLDD 231


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,911,670
Number of Sequences: 5004
Number of extensions: 58168
Number of successful extensions: 148
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)