Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4d02
         (733 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0173 + 12248973-12249809                                         31   0.94 
08_02_0418 + 16908077-16908156,16908307-16908595,16908686-16908955     31   1.2  
08_02_0402 - 16769239-16769504,16769842-16770016,16772762-167730...    28   6.6  
06_02_0364 + 15178583-15178881,15179652-15179723,15179853-151799...    28   6.6  
04_03_0389 - 15302079-15302120,15302545-15302634,15302718-153029...    28   8.8  

>04_03_0173 + 12248973-12249809
          Length = 278

 Score = 31.1 bits (67), Expect = 0.94
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -3

Query: 725 GPDFTDPKPVTTVSPNFNGRSASGSGNGTA 636
           GP   D  P  T SP+ NG SA+  G  T+
Sbjct: 224 GPGIVDTPPTKTTSPSTNGTSAAADGTTTS 253


>08_02_0418 + 16908077-16908156,16908307-16908595,16908686-16908955
          Length = 212

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 18/50 (36%), Positives = 20/50 (40%)
 Frame = -3

Query: 515 RPPKSRNTDPMRTDTSSFVT*SKHCAAVSTHCLLTMAPPHQCLPCNLTET 366
           RPPKSR   P        +  SKH   V  HC     P H    C L +T
Sbjct: 51  RPPKSRRKAPHEVQGKHGLKMSKH--GVEMHCKYCNEPGHNQRGCKLKKT 98


>08_02_0402 -
           16769239-16769504,16769842-16770016,16772762-16773028,
           16773156-16773368
          Length = 306

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -2

Query: 432 QHPLLADDGTPAPML-AVQPNRNSVRIILQAHKARLGGEP 316
           Q P + D G    +L AV P RN  R  +  H +R GG P
Sbjct: 120 QAPHINDHGKVHDVLQAVIPRRNQTRQRIHIHTSRAGGSP 159


>06_02_0364 +
           15178583-15178881,15179652-15179723,15179853-15179917,
           15180890-15180934,15182493-15183170,15183376-15183410,
           15183647-15183736,15183896-15183985,15184164-15184262,
           15184938-15185013,15185473-15185588
          Length = 554

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 12/41 (29%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = +1

Query: 526 VLDVRRHPDYRVD--QYYPEHNLAMVKVNLPIAANSRMQAV 642
           ++ + RH  +RVD  ++ P H++ +  + +PI A +R  +V
Sbjct: 127 LMGMHRHRQHRVDFMEWAPGHHVGVALITMPIRAGARYCSV 167


>04_03_0389 -
           15302079-15302120,15302545-15302634,15302718-15302983,
           15303196-15303883
          Length = 361

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 17/47 (36%), Positives = 18/47 (38%)
 Frame = -3

Query: 515 RPPKSRNTDPMRTDTSSFVT*SKHCAAVSTHCLLTMAPPHQCLPCNL 375
           RPPKSR   P      +    SKH   V  HC     P H    C L
Sbjct: 242 RPPKSRRKAPHEVQGKNGSKMSKH--GVEMHCSYCKEPGHNKKGCPL 286


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,352,944
Number of Sequences: 37544
Number of extensions: 462432
Number of successful extensions: 1398
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1398
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)