Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4d01
         (523 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|...    67   2e-12
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    27   1.7  
SPCC1442.02 ||SPCC1450.18|DUF1760 family protein|Schizosaccharom...    25   5.2  
SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2 |...    25   5.2  
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe...    25   6.8  
SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3 ...    25   6.8  
SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces pomb...    25   6.8  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    25   6.8  
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p...    25   9.0  
SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr 1|...    25   9.0  
SPBC1539.05 |cog3||Golgi transport complex subunit Cog3 |Schizos...    25   9.0  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    25   9.0  

>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 785

 Score = 66.9 bits (156), Expect = 2e-12
 Identities = 38/100 (38%), Positives = 62/100 (62%), Gaps = 3/100 (3%)
 Frame = +2

Query: 173 KMRIRAFPMTMDEKYVERI--WSLLKNAIQEIQKKNNSGLSFEELYRNAYTMVLHKHGER 346
           K++IRA P       V+    W +L+ AI +I +K+ S LSFEELYRNAY +VLHK+GE+
Sbjct: 6   KLKIRA-PRKFSANQVDFATHWEVLQRAIGDIFQKSTSQLSFEELYRNAYILVLHKYGEK 64

Query: 347 LYTGLXEVVTQHLETKVREDVLHSLHNGF-LXTLNNAWTD 463
           LY  + +V+     ++++E+ + +++  +    L NA  D
Sbjct: 65  LYNHVQDVI----RSRLKEETVPAIYKNYDASLLGNALLD 100



 Score = 38.3 bits (85), Expect = 7e-04
 Identities = 17/37 (45%), Positives = 24/37 (64%)
 Frame = +2

Query: 410 LHSLHNGFLXTLNNAWTDHQTSMVMIRDILMYMDRVF 520
           L + H  FL +L N+W DH  SM MI  +L Y+D+V+
Sbjct: 115 LEAAHR-FLSSLVNSWKDHIVSMQMISSVLKYLDKVY 150


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -2

Query: 180 LILPGILSFGKVLFIIGALIY 118
           +I P IL FG + FIIG L+Y
Sbjct: 650 IISPLILVFGLIYFIIGFLVY 670


>SPCC1442.02 ||SPCC1450.18|DUF1760 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 562

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = +3

Query: 378 NILKLRSEKMYCIHYTMVSYXLSTMHGLTIKPAW 479
           NIL++ S+++YC+    +S     MH   +   +
Sbjct: 155 NILQIDSDELYCVWKISISSIQDAMHRFPVSECY 188


>SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 367

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 264 CISCMAFFNKLHIRSTYF 211
           C+ C A   +LHI++ YF
Sbjct: 274 CLMCAAALKQLHIKAVYF 291


>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 882

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +2

Query: 182 IRAFPMTMDEKYVERIWSLLKNAIQEIQ 265
           +RAF +T DEKY+++   L  + I + Q
Sbjct: 747 LRAFGVTEDEKYIQKTLDLTLDPIVKEQ 774


>SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 315

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/11 (81%), Positives = 11/11 (100%)
 Frame = -3

Query: 431 NHCVMNAIHLL 399
           NHCVMNAI+L+
Sbjct: 210 NHCVMNAINLV 220


>SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = +1

Query: 211 EVCGAYMELVKECHTRNTKEKQLWT 285
           E CGA    VK+C  R  K    WT
Sbjct: 114 ENCGAMSHKVKDCMERPRKRGARWT 138


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
           Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 7/23 (30%), Positives = 17/23 (73%)
 Frame = -2

Query: 123 IYFLHQQNNLFLYHNTVYLFFTI 55
           ++FLH  + +++ H +V+ +FT+
Sbjct: 418 LHFLHNFSRIWILHISVFWYFTV 440


>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 183 ILILPGILSFGKVLFIIGALIY 118
           + +L  +LSF   L IIG++IY
Sbjct: 237 VSVLATLLSFAPTLLIIGSVIY 258


>SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 14/25 (56%), Positives = 15/25 (60%)
 Frame = +2

Query: 239 LKNAIQEIQKKNNSGLSFEELYRNA 313
           LK  IQEIQK N   LS  E+ R A
Sbjct: 25  LKARIQEIQKGNQELLSKYEVIRRA 49


>SPBC1539.05 |cog3||Golgi transport complex subunit Cog3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 735

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = +3

Query: 168 LAK*GSELSL*LWMRSMWSVYGAC*RMPYKKYKRKTTLDYHLKSF 302
           L K  S+ SL  ++ + + VY  C     +    K  LDYHLKSF
Sbjct: 289 LCKLCSKESLDAFLPAFYDVYFQC-----RTRLLKPVLDYHLKSF 328


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/42 (21%), Positives = 24/42 (57%)
 Frame = +2

Query: 197 MTMDEKYVERIWSLLKNAIQEIQKKNNSGLSFEELYRNAYTM 322
           +T+DE  +++  ++    ++++    NS +SF + +R  Y +
Sbjct: 312 ITVDENTLQQNMAIFFEGVKDLLSSKNSLMSFYKAFRILYAL 353


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,179,631
Number of Sequences: 5004
Number of extensions: 45441
Number of successful extensions: 117
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)