Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4d01
         (523 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19637| Best HMM Match : Cullin (HMM E-Value=0)                      74   6e-14
SB_1739| Best HMM Match : Beta-lactamase (HMM E-Value=3.7e-22)         34   0.082
SB_13020| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.0  
SB_28359| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_28358| Best HMM Match : Phosphodiest (HMM E-Value=6.2e-05)          29   3.1  
SB_25818| Best HMM Match : Pkinase (HMM E-Value=1.7e-20)               29   3.1  
SB_50535| Best HMM Match : PPE (HMM E-Value=1.1)                       28   5.4  
SB_29483| Best HMM Match : TerC (HMM E-Value=0.92)                     28   5.4  
SB_45852| Best HMM Match : I-set (HMM E-Value=0)                       27   7.1  
SB_57295| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31)        27   9.4  
SB_42380| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_13063| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_19637| Best HMM Match : Cullin (HMM E-Value=0)
          Length = 685

 Score = 74.1 bits (174), Expect = 6e-14
 Identities = 33/43 (76%), Positives = 38/43 (88%)
 Frame = +2

Query: 395 VREDVLHSLHNGFLXTLNNAWTDHQTSMVMIRDILMYMDRVFV 523
           +R+DV+ SL+N FL TLN AW DHQTSMVMIRDILMYMDRV+V
Sbjct: 20  IRKDVVASLNNNFLDTLNAAWNDHQTSMVMIRDILMYMDRVYV 62


>SB_1739| Best HMM Match : Beta-lactamase (HMM E-Value=3.7e-22)
          Length = 539

 Score = 33.9 bits (74), Expect = 0.082
 Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
 Frame = +2

Query: 110 CKKYIKAPMMKSTLPKDKIPGKMRIRAFPMTMDEKYVERIWSLLKNAIQEIQK-KNNSGL 286
           CK Y      K +    + PGK  + A P  +  +  E +  + K+ +    K +N S +
Sbjct: 46  CKNYKSCEQQKRSPLDSRCPGKPPLFALPKPLPSRIDEALDKIDKHLLSIAAKAQNKSAI 105

Query: 287 SFEELYRNAYTMVLHKHGERLYTG 358
           S    YR+A     H +G + Y G
Sbjct: 106 SINIFYRDAVVWKGH-YGSKTYKG 128


>SB_13020| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 722

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 17/71 (23%), Positives = 33/71 (46%)
 Frame = +2

Query: 278 SGLSFEELYRNAYTMVLHKHGERLYTGLXEVVTQHLETKVREDVLHSLHNGFLXTLNNAW 457
           SGL ++E +    ++  H   +  + G    V +H+E K+R+D +  L    +      W
Sbjct: 616 SGLEYDETHTPLSSLPRHIRMKNFF-GFLGYVAEHMELKIRQDEVMPLFRDLIGPY-GTW 673

Query: 458 TDHQTSMVMIR 490
            D  + M ++R
Sbjct: 674 LDKNSVMDIMR 684


>SB_28359| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 208

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = +2

Query: 341 ERLYTGLXEVVTQHLETKVREDV---LHSLHN 427
           + LY  L +V T H++  +REDV    HS HN
Sbjct: 48  QELYNNLSQVNTTHMKVYLREDVPEEYHSRHN 79


>SB_28358| Best HMM Match : Phosphodiest (HMM E-Value=6.2e-05)
          Length = 425

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = +2

Query: 341 ERLYTGLXEVVTQHLETKVREDV---LHSLHN 427
           + LY  L +V T H++  +REDV    HS HN
Sbjct: 265 QELYNNLSQVNTTHMKVYLREDVPEEYHSRHN 296


>SB_25818| Best HMM Match : Pkinase (HMM E-Value=1.7e-20)
          Length = 956

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 12/38 (31%), Positives = 25/38 (65%)
 Frame = -3

Query: 350 IVFLHVCAVPLYMHYGKALQMIVQSCFSFVFLVWHSLT 237
           ++FL+VCA+   + + +A+   + +  SFV ++W S+T
Sbjct: 73  LIFLNVCALLFTLAFNRAVGFSLSN--SFVLVLWRSVT 108


>SB_50535| Best HMM Match : PPE (HMM E-Value=1.1)
          Length = 299

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +2

Query: 305 RNAYTMVLHKHGERLYTGLXEVVTQHLET 391
           R  YT++L  +G  ++  L E +++HLE+
Sbjct: 9   RKTYTLLLRGNGSPVWAALPEYLSEHLES 37


>SB_29483| Best HMM Match : TerC (HMM E-Value=0.92)
          Length = 586

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = -3

Query: 353 CIVFLHVCAVPLYMHYGKALQM---IVQSCFSFVFLVWHSL 240
           C+V   VCA+   +    A+ M   ++Q   S+ FL+W SL
Sbjct: 77  CVVVYQVCAINAIIIILLAIAMPSRMLQRALSYCFLIWSSL 117


>SB_45852| Best HMM Match : I-set (HMM E-Value=0)
          Length = 1122

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = -2

Query: 219  TYFSSIVIGKALILILPGILSFGKVLFIIGALI-YFLHQQNNLFLYHN 79
            T F +I+IG  ++LI+P I+    V+ II  +I  F H  ++   +H+
Sbjct: 994  TIFITIIIGVVVVLIIPIIIIVIIVIIIITIIITIFNHYHHHRRRHHH 1041


>SB_57295| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1320

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 502 HQNISYHDHAGLMVSPCIVES 440
           H N+ Y+  AG +VS CI ES
Sbjct: 643 HLNLKYYKFAGQVVSKCIYES 663


>SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31)
          Length = 2122

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 17/47 (36%), Positives = 27/47 (57%)
 Frame = +2

Query: 125  KAPMMKSTLPKDKIPGKMRIRAFPMTMDEKYVERIWSLLKNAIQEIQ 265
            K  M++S L KDK+  K+RI    + +D    ER+   L NA ++I+
Sbjct: 909  KDGMLESNLSKDKVNNKLRIDNQKLLVDG---ERLRDNLHNAEEKIE 952


>SB_42380| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1430

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +2

Query: 194 PMTMDEKYVERIWSLLKNAIQEIQKKNNSG 283
           P  MD+ +V+++W L  N +  +    N G
Sbjct: 305 PDFMDQPFVDKVWELTANGVVMVSAIGNDG 334


>SB_13063| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 238

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -2

Query: 222 STYFSSIVIGKALILILPGILSFGKVLFII 133
           S +  S+  GK L ++    L +GKVLF++
Sbjct: 68  SLHTRSLKYGKVLFVVTNSSLKYGKVLFVV 97


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,574,943
Number of Sequences: 59808
Number of extensions: 312886
Number of successful extensions: 817
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)