Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte4d01
(523 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58085-1|AAC47122.1| 780|Caenorhabditis elegans CUL-3 protein. 164 3e-41
AC024744-3|AAK72067.1| 777|Caenorhabditis elegans Cullin protei... 164 3e-41
AF067945-15|AAC17678.2| 286|Caenorhabditis elegans Serpentine r... 29 2.7
Z81034-1|CAB02726.1| 194|Caenorhabditis elegans Hypothetical pr... 28 3.5
U56965-10|AAB52670.1| 1041|Caenorhabditis elegans Nicotinamide n... 28 3.5
U41037-3|AAA82389.1| 378|Caenorhabditis elegans Hypothetical pr... 28 4.7
AF040657-6|AAB95051.2| 261|Caenorhabditis elegans Hypothetical ... 28 4.7
U64836-8|AAG24063.1| 339|Caenorhabditis elegans Serpentine rece... 27 6.2
U00067-9|AAK20073.1| 364|Caenorhabditis elegans Hypothetical pr... 27 6.2
L80003-1|AAL77521.1| 1276|Caenorhabditis elegans guanylyl cyclas... 27 6.2
AF106591-5|AAK71394.1| 637|Caenorhabditis elegans Hypothetical ... 27 6.2
AF106591-4|AAO61422.1| 1217|Caenorhabditis elegans Hypothetical ... 27 6.2
AF106591-3|AAO61423.1| 1276|Caenorhabditis elegans Hypothetical ... 27 6.2
AF016417-2|AAB65279.2| 533|Caenorhabditis elegans Hypothetical ... 27 6.2
U64860-1|AAB04991.1| 155|Caenorhabditis elegans Hypothetical pr... 27 8.1
>U58085-1|AAC47122.1| 780|Caenorhabditis elegans CUL-3 protein.
Length = 780
Score = 164 bits (399), Expect = 3e-41
Identities = 77/118 (65%), Positives = 94/118 (79%), Gaps = 1/118 (0%)
Frame = +2
Query: 173 KMRIRAFPMTMDEKYVERIWSLLKNAIQEIQKKNNSGLSFEELYRNAYTMVLHKHGERLY 352
KMRIR F T+DE+YV + W LLK AIQEIQ+KNNSGLSFEELYRNAYTMVLHKHGERLY
Sbjct: 12 KMRIRPFMATIDEQYVTQTWELLKRAIQEIQRKNNSGLSFEELYRNAYTMVLHKHGERLY 71
Query: 353 TGLXEVVTQHLETKVREDVLHSLHNG-FLXTLNNAWTDHQTSMVMIRDILMYMDRVFV 523
GL +V+ H+ VR ++ S+++G FL T+ +W DH +MVMIRDILMYMDR++V
Sbjct: 72 NGLKDVIQDHM-ASVRIRIIESMNSGSFLETVAESWADHTVAMVMIRDILMYMDRIYV 128
>AC024744-3|AAK72067.1| 777|Caenorhabditis elegans Cullin protein 3
protein.
Length = 777
Score = 164 bits (399), Expect = 3e-41
Identities = 77/118 (65%), Positives = 94/118 (79%), Gaps = 1/118 (0%)
Frame = +2
Query: 173 KMRIRAFPMTMDEKYVERIWSLLKNAIQEIQKKNNSGLSFEELYRNAYTMVLHKHGERLY 352
KMRIR F T+DE+YV + W LLK AIQEIQ+KNNSGLSFEELYRNAYTMVLHKHGERLY
Sbjct: 12 KMRIRPFMATIDEQYVTQTWELLKRAIQEIQRKNNSGLSFEELYRNAYTMVLHKHGERLY 71
Query: 353 TGLXEVVTQHLETKVREDVLHSLHNG-FLXTLNNAWTDHQTSMVMIRDILMYMDRVFV 523
GL +V+ H+ VR ++ S+++G FL T+ +W DH +MVMIRDILMYMDR++V
Sbjct: 72 NGLKDVIQDHM-ASVRIRIIESMNSGSFLETVAESWADHTVAMVMIRDILMYMDRIYV 128
>AF067945-15|AAC17678.2| 286|Caenorhabditis elegans Serpentine
receptor, class x protein16 protein.
Length = 286
Score = 28.7 bits (61), Expect = 2.7
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = -2
Query: 228 IRSTYF--SSIVIGKALILILPGILSFGKVLFIIGALIYFLH 109
I+ T+F ++I G+ I+ +LS ++FI+G L F+H
Sbjct: 220 IKQTFFQGTTIFTGQVTYYIIAPLLSNSIIIFIVGTLWAFMH 261
>Z81034-1|CAB02726.1| 194|Caenorhabditis elegans Hypothetical
protein C15C6.1 protein.
Length = 194
Score = 28.3 bits (60), Expect = 3.5
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = -2
Query: 243 FNKLHIRSTYFSSIVIGKALILILPGIL--SFGKVLFII 133
F KLHI T + +G ILI+ G L F K +F++
Sbjct: 26 FGKLHIHHTMNVIVAVGVLAILIIMGALYMKFRKAMFVM 64
>U56965-10|AAB52670.1| 1041|Caenorhabditis elegans Nicotinamide
nucleotide transhydrogenaseprotein 1 protein.
Length = 1041
Score = 28.3 bits (60), Expect = 3.5
Identities = 33/117 (28%), Positives = 53/117 (45%), Gaps = 3/117 (2%)
Frame = +2
Query: 56 IVKNKYTVL*YKNKLFCWCKKYIKAPMMKSTLPKDKIPGKMRIRAFPMTMDEKYVERIWS 235
I+++K T L Y +LF +K I+ +K +PK+ PG+ R+ P +
Sbjct: 3 ILRSKITRL-YWFRLFSNGQKKIEYSKLKVAVPKEIFPGEKRVSLSP--------NGVAL 53
Query: 236 LLKNAIQEIQKKNN---SGLSFEELYRNAYTMVLHKHGERLYTGLXEVVTQHLETKV 397
L KN I + ++N +G S EE R+ + KH E T + V E +V
Sbjct: 54 LKKNGISVLIEENAGVLAGYSNEEYVRSGAD--VGKHNEVFNTDIMLKVRPPTENEV 108
>U41037-3|AAA82389.1| 378|Caenorhabditis elegans Hypothetical
protein T24C12.1 protein.
Length = 378
Score = 27.9 bits (59), Expect = 4.7
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = -2
Query: 264 CI-SCMAFFNKLHIRSTYFSSIVIGKALILILPGILSFGKVLFIIGALIYFL 112
C+ SC +FF+K+ RS +F + GKA L ++ V +GA I L
Sbjct: 52 CVFSCSSFFSKIFPRSCFF--MRFGKAAWLYGSNMILLLAVFLFLGATIVML 101
>AF040657-6|AAB95051.2| 261|Caenorhabditis elegans Hypothetical
protein T20H9.2 protein.
Length = 261
Score = 27.9 bits (59), Expect = 4.7
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = -2
Query: 294 SNDSPELFFFCISCMAFFNKLHIRSTYFSSIVIGKAL 184
SND + F FC+ ++ + LHI++ YF SI I AL
Sbjct: 226 SNDWWDGFCFCVKRLSSDDFLHIKN-YFDSIFIEPAL 261
>U64836-8|AAG24063.1| 339|Caenorhabditis elegans Serpentine
receptor, class h protein187 protein.
Length = 339
Score = 27.5 bits (58), Expect = 6.2
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = -2
Query: 294 SNDSPELF-FFCISCMAFFNKLHIRSTYFSSIVIGKALILILPGILSFGKVLFIIGALIY 118
S S E+F F C CM F + +T ++ + KA+ + L +S L +I L
Sbjct: 206 STTSTEVFTFVCFICMTFSQQNRRITTSSRTLNLKKAIFIALIIQMSVNAFLHLIPLLYA 265
Query: 117 FLHQQNNLFLYHN 79
F+ + ++ Y+N
Sbjct: 266 FI---STVYTYYN 275
>U00067-9|AAK20073.1| 364|Caenorhabditis elegans Hypothetical
protein F54E7.1a protein.
Length = 364
Score = 27.5 bits (58), Expect = 6.2
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = -2
Query: 186 LILILPGILSFGKVLFIIGALIYFLHQQNNLFLYHNT 76
LI LPG+ FG L +I LIY ++HNT
Sbjct: 62 LIFKLPGMKPFGWTLTLIQFLIYSGCGYTECIIWHNT 98
>L80003-1|AAL77521.1| 1276|Caenorhabditis elegans guanylyl cyclase
protein.
Length = 1276
Score = 27.5 bits (58), Expect = 6.2
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Frame = -3
Query: 359 GQCIVFLHVCAVPLYMHYGKALQMI----VQSCFSFVFLVWHSLTSSIYAPHTSHP*S*G 192
G CI F H C V Y G ++ ++ + + H L ++ H S S G
Sbjct: 794 GACIDFPHYCVVTEYCPKGSLEDILENEKIELDKLMKYSLLHDLVKGLFFLHNSEIRSHG 853
Query: 191 KL*SSFCQV 165
+L SS C V
Sbjct: 854 RLKSSNCVV 862
>AF106591-5|AAK71394.1| 637|Caenorhabditis elegans Hypothetical
protein T01A4.1b protein.
Length = 637
Score = 27.5 bits (58), Expect = 6.2
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Frame = -3
Query: 359 GQCIVFLHVCAVPLYMHYGKALQMI----VQSCFSFVFLVWHSLTSSIYAPHTSHP*S*G 192
G CI F H C V Y G ++ ++ + + H L ++ H S S G
Sbjct: 167 GACIDFPHYCVVTEYCPKGSLEDILENEKIELDKLMKYSLLHDLVKGLFFLHNSEIRSHG 226
Query: 191 KL*SSFCQV 165
+L SS C V
Sbjct: 227 RLKSSNCVV 235
>AF106591-4|AAO61422.1| 1217|Caenorhabditis elegans Hypothetical
protein T01A4.1a protein.
Length = 1217
Score = 27.5 bits (58), Expect = 6.2
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Frame = -3
Query: 359 GQCIVFLHVCAVPLYMHYGKALQMI----VQSCFSFVFLVWHSLTSSIYAPHTSHP*S*G 192
G CI F H C V Y G ++ ++ + + H L ++ H S S G
Sbjct: 735 GACIDFPHYCVVTEYCPKGSLEDILENEKIELDKLMKYSLLHDLVKGLFFLHNSEIRSHG 794
Query: 191 KL*SSFCQV 165
+L SS C V
Sbjct: 795 RLKSSNCVV 803
>AF106591-3|AAO61423.1| 1276|Caenorhabditis elegans Hypothetical
protein T01A4.1c protein.
Length = 1276
Score = 27.5 bits (58), Expect = 6.2
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Frame = -3
Query: 359 GQCIVFLHVCAVPLYMHYGKALQMI----VQSCFSFVFLVWHSLTSSIYAPHTSHP*S*G 192
G CI F H C V Y G ++ ++ + + H L ++ H S S G
Sbjct: 794 GACIDFPHYCVVTEYCPKGSLEDILENEKIELDKLMKYSLLHDLVKGLFFLHNSEIRSHG 853
Query: 191 KL*SSFCQV 165
+L SS C V
Sbjct: 854 RLKSSNCVV 862
>AF016417-2|AAB65279.2| 533|Caenorhabditis elegans Hypothetical
protein F17A9.2 protein.
Length = 533
Score = 27.5 bits (58), Expect = 6.2
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = +2
Query: 296 ELYRNAYTMVLHKHGERLYTGLXEVVTQHLETKV 397
E +++A+T++ +K G+ L T TQHL+ ++
Sbjct: 380 EKFKSAFTLMANKQGKALVTFERNFRTQHLQVQM 413
>U64860-1|AAB04991.1| 155|Caenorhabditis elegans Hypothetical
protein R106.1 protein.
Length = 155
Score = 27.1 bits (57), Expect = 8.1
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -2
Query: 270 FFCISCMAFFNKLHIRSTYFSSIVIGKALILILPGILS 157
F C+ C LHI S + + +V+G +L + L +L+
Sbjct: 80 FLCLLCSHSPLSLHISSKFHTRLVVGVSLSIPLASLLT 117
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,875,122
Number of Sequences: 27780
Number of extensions: 250056
Number of successful extensions: 775
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 768
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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