Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4d01
         (523 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   4.4  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   5.8  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   7.7  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    21   7.7  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    21   7.7  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +2

Query: 194 PMTMDEKYVERIWSLLKNAIQEIQKKNN 277
           P   + + VER+ + L+NA+Q +  +N+
Sbjct: 351 PGLRNTELVERMHNKLRNALQTVLAQNH 378


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 308 YGKALQMIVQSCFSFVFL 255
           Y KA+ + + SC  FVFL
Sbjct: 272 YVKAIDVWMSSCSVFVFL 289


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 308 YGKALQMIVQSCFSFVF 258
           Y KA+ + +  CF FVF
Sbjct: 300 YVKAIDIYLVMCFVFVF 316


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 10/38 (26%), Positives = 17/38 (44%)
 Frame = +2

Query: 239 LKNAIQEIQKKNNSGLSFEELYRNAYTMVLHKHGERLY 352
           L+  I     KNN  L ++++    Y   + K   R+Y
Sbjct: 330 LREEINTFCPKNNKELKYDDIKEMEYLDKVFKETLRMY 367


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 252 YKKYKRKTTLDYHL 293
           Y+K KRK  L+Y L
Sbjct: 53  YEKLKRKMILEYEL 66


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,876
Number of Sequences: 438
Number of extensions: 3335
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)