Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4c24
         (706 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    23   1.8  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    23   2.4  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    23   2.4  
AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock prote...    23   3.2  
AM292377-1|CAL23189.2|  358|Tribolium castaneum gustatory recept...    22   5.6  
AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory recept...    22   5.6  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   7.4  

>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +3

Query: 201 SRQRHHFRRWLQFLRNRLRKT*H*LGLNDFEINEYF*NKSCVVK 332
           +R +H F         R ++    LGLN+ +I  +F NK   +K
Sbjct: 241 ARLKHEFAENRYLTERRRQQLSAELGLNEAQIKIWFQNKRAKIK 284


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 53  DSPESL*MKNTKSPN 97
           DSP S+ M NT +PN
Sbjct: 111 DSPSSMHMANTAAPN 125


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 53  DSPESL*MKNTKSPN 97
           DSP S+ M NT +PN
Sbjct: 113 DSPSSMHMANTAAPN 127


>AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock protein
           70 protein.
          Length = 195

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 273 VSVMSSSNGFLRIVATDGN 217
           VS+++  NG   +VAT G+
Sbjct: 34  VSILTIDNGVFEVVATSGD 52


>AM292377-1|CAL23189.2|  358|Tribolium castaneum gustatory receptor
           candidate 56 protein.
          Length = 358

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -2

Query: 606 KIMTYTWFELKKNIVFINILL 544
           K+  + W+ L +N + + ILL
Sbjct: 45  KVFKFAWWPLTRNALLVLILL 65


>AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory receptor
           candidate 21 protein.
          Length = 386

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -2

Query: 606 KIMTYTWFELKKNIVFINILL 544
           K+  + W+ L +N + + ILL
Sbjct: 45  KVFKFAWWPLTRNALLVLILL 65


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +1

Query: 157 LKSDLQGGSAPTRYPADKDTISVGGY 234
           L  DLQG SAP      K   ++G Y
Sbjct: 178 LGKDLQGISAPVEAHLRKGRGAIGAY 203


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,719
Number of Sequences: 336
Number of extensions: 3536
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18634795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)