Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4c24
         (706 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist...    33   0.20 
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele...    33   0.20 
AL117204-38|CAL49444.1|  982|Caenorhabditis elegans Hypothetical...    33   0.26 
AL117204-31|CAB55122.2|  727|Caenorhabditis elegans Hypothetical...    33   0.26 
U40952-6|AAA81740.3|  328|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AF040654-1|AAK21448.1| 1236|Caenorhabditis elegans Hypothetical ...    29   4.3  

>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
            protein 1 protein.
          Length = 1852

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 22/64 (34%), Positives = 31/64 (48%)
 Frame = +1

Query: 13   SYNPNQGSYQTGQGFTGKPLNEKYEEPEPTGPPRGFFYSFTYPVSSIVLKSDLQGGSAPT 192
            +Y+P   SY++G G++  P + KY    PT  P    YS T P  S    S     S+PT
Sbjct: 1702 TYSPTSPSYESGGGYS--PSSPKYSPSSPTYSPTSPSYSPTSPQYSPT--SPQYSPSSPT 1757

Query: 193  RYPA 204
              P+
Sbjct: 1758 YTPS 1761


>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.elegans
            RNA polymeraseII largest subunit (ama-1 IV) gene,
            complete cds. ).
          Length = 1859

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 22/64 (34%), Positives = 31/64 (48%)
 Frame = +1

Query: 13   SYNPNQGSYQTGQGFTGKPLNEKYEEPEPTGPPRGFFYSFTYPVSSIVLKSDLQGGSAPT 192
            +Y+P   SY++G G++  P + KY    PT  P    YS T P  S    S     S+PT
Sbjct: 1709 TYSPTSPSYESGGGYS--PSSPKYSPSSPTYSPTSPSYSPTSPQYSPT--SPQYSPSSPT 1764

Query: 193  RYPA 204
              P+
Sbjct: 1765 YTPS 1768


>AL117204-38|CAL49444.1|  982|Caenorhabditis elegans Hypothetical
           protein Y116A8C.16c protein.
          Length = 982

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = -2

Query: 207 VGWISSWCRSSLQITLQDDTGDWVGETVEEAPWWTGWFGLFVFFI*RLS 61
           +G +  W   S +  L  +T   + E  +E PW+T W      F+  LS
Sbjct: 397 IGRVGQWMGRSYKDNLSKETRKMLAEGTDERPWFTYWITTIQIFVCLLS 445


>AL117204-31|CAB55122.2|  727|Caenorhabditis elegans Hypothetical
           protein Y116A8C.16a protein.
          Length = 727

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = -2

Query: 207 VGWISSWCRSSLQITLQDDTGDWVGETVEEAPWWTGWFGLFVFFI*RLS 61
           +G +  W   S +  L  +T   + E  +E PW+T W      F+  LS
Sbjct: 142 IGRVGQWMGRSYKDNLSKETRKMLAEGTDERPWFTYWITTIQIFVCLLS 190


>U40952-6|AAA81740.3|  328|Caenorhabditis elegans Hypothetical
           protein C03B1.5 protein.
          Length = 328

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -2

Query: 630 CEYKKSCTKIMTYTWFELKKNIVFINILLCYSFQ 529
           C+Y K   ++ T+T      N++FI  + C +FQ
Sbjct: 69  CDYHKIIREVNTHTLCRHHDNVLFIGSIYCQTFQ 102


>AF040654-1|AAK21448.1| 1236|Caenorhabditis elegans Hypothetical
           protein R06B10.1 protein.
          Length = 1236

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +1

Query: 19  NPNQGSYQTGQGFTGKPLNEKYEEPEPTGPPRGFFYSFTYPVSSIVL 159
           NP + + ++  GF  K + +  E P+P  PP+  +  F+  +   VL
Sbjct: 840 NPTKYAKKSSNGFMEKVVKDIAEYPKPVDPPKNSWERFSEYIKGQVL 886


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,047,691
Number of Sequences: 27780
Number of extensions: 316489
Number of successful extensions: 881
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)