Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4c21
         (732 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1223.08c |dfr1||dihydrofolate reductase Dfr1|Schizosaccharom...    75   1e-14
SPAC22A12.06c |||serine hydrolase|Schizosaccharomyces pombe|chr ...    57   3e-09
SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces...    29   0.68 
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    27   2.1  
SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase Ran1|Schi...    27   3.6  
SPBC776.07 |||mitochondrial Mam33 family protein|Schizosaccharom...    26   6.4  
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch...    26   6.4  

>SPCC1223.08c |dfr1||dihydrofolate reductase
           Dfr1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 461

 Score = 74.9 bits (176), Expect = 1e-14
 Identities = 50/146 (34%), Positives = 75/146 (51%), Gaps = 14/146 (9%)
 Frame = +1

Query: 337 LKILAFHGYRQNGTVFRAKIGSFRKAVAKYAQLTFISAP---HKVLNDGSGSEDSRSWWF 507
           LK+L  HG+ Q+G VF  K+GS +K ++KYA+L F + P    +  +     E  R    
Sbjct: 5   LKVLCLHGWIQSGPVFSKKMGSVQKYLSKYAELHFPTGPVVADEEADPNDEEEKKRLAAL 64

Query: 508 NSEDN-----TFSGKCLGGPAVGFEETLRLIELVVEEHGPFHGFMGFSQGACLVGLLAAM 672
             E N      F  +        ++E+L  I   ++E GPF G +GFSQGA +  +LA M
Sbjct: 65  GGEQNGGKFGWFEVEDFKNTYGSWDESLECINQYMQEKGPFDGLIGFSQGAGIGAMLAQM 124

Query: 673 QQKG-----YLKY-AFDFAIFLSGFR 732
            Q G     Y+++  F F +F+ GFR
Sbjct: 125 LQPGQPPNPYVQHPPFKFVVFVGGFR 150


>SPAC22A12.06c |||serine hydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 429

 Score = 56.8 bits (131), Expect = 3e-09
 Identities = 47/151 (31%), Positives = 72/151 (47%), Gaps = 19/151 (12%)
 Frame = +1

Query: 334 KLKILAFHGYRQNGTVFRAKIGSFRKAVAKYAQLTFISAP---HKVLNDGSGSE-DSRSW 501
           K KIL  HGY ++G +F  K+ + R+ +A      F + P    K  ++ +GS  D+ S 
Sbjct: 6   KSKILCIHGYAESGELFSVKLRALRERMADSVDFYFPTGPIELDKAKDELNGSGFDALST 65

Query: 502 WFNSED----------NTFSGKCLGGPAVGFEETLRLIELVVEEHGPFHGFMGFSQGACL 651
            F+S            N ++      P   FE     +   ++EHGPF G +GFSQG  L
Sbjct: 66  VFSSSPASHRRGWWRINEYADTKQLEPTKAFE----YLASYIKEHGPFDGILGFSQGTNL 121

Query: 652 VGLLAAM-----QQKGYLKYAFDFAIFLSGF 729
              LAA+      Q+ + +  F FA+F SG+
Sbjct: 122 AANLAALVTIPKYQEYFSQPPFRFALFFSGY 152


>SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 336

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = -2

Query: 713 IAKSKAYFKYPFCCMAANKPTKHAP---CEKPINPWKGPCSS 597
           + KS + F++PF     NKP + AP      P NP+K P S+
Sbjct: 271 VPKSNSGFRFPFM---RNKPAEQAPENPFRDPENPFKDPASA 309


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1157

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 25/111 (22%), Positives = 45/111 (40%), Gaps = 2/111 (1%)
 Frame = -2

Query: 728 NPDRNIAKSKAYFKYPFCCMAANKPTKHAPCEKPINPWKGPCSSTTNSINLKVSSKPTAG 549
           +P   ++ S   F  P   +  N+  + +P E P++       S   S++      P   
Sbjct: 185 DPFSPVSPSNPNFLTPLKPIDGNQEWQQSPLESPLS-----MHSLQESLHSVEPESPIFQ 239

Query: 548 PPKHLPLNVLSSE--LNHHERESSLPLPSFKTL*GAEIKVSCAYLATAFRN 402
               +PL+  S +  +NH    +SLP  SF     +  +VS +  A   +N
Sbjct: 240 QAPQIPLSNASQQSYINHSSDGASLPQSSFLNFNSSGKRVSVSAAAQQHKN 290


>SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase
           Ran1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 470

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
 Frame = -2

Query: 623 NPWKGPCSSTTNSINLKVSSKPT--AGPPKHLPLNVLSSELNHHERESSLPLPSFKTL 456
           NPWK  CS T  +    V +  T  +  P    LN L + +     ++ + LP   TL
Sbjct: 237 NPWKRACSQTDGTYRSYVHNPSTLLSILPISRELNSLLNRIFDRNPKTRITLPELSTL 294


>SPBC776.07 |||mitochondrial Mam33 family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 269

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = -2

Query: 566 SKPTAGPPKHLPLNVLSSELNHHERE--SSLPLP 471
           S  TAG P+   +N LSSE+++ + +  S + LP
Sbjct: 50  SSHTAGNPRSKLINALSSEIDYEKNQVLSEISLP 83


>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 815

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 536 LPLNVLSSELNHHERESSLPLPSF 465
           + +N LSS LN+H +  S+  PSF
Sbjct: 702 IDINTLSSMLNYHTQAVSIHHPSF 725


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,026,710
Number of Sequences: 5004
Number of extensions: 63246
Number of successful extensions: 164
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)