Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte4c21
(732 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0785 + 23135764-23135973,23136061-23136713,23136822-231369... 61 8e-10
04_04_0055 + 22403608-22403865,22403977-22404075,22404172-224042... 57 1e-08
07_03_1738 - 29141829-29141989,29142112-29142343,29142751-291427... 43 3e-04
03_02_0645 + 10133658-10134140,10134280-10134627,10134787-10135131 34 0.10
02_02_0671 - 12811102-12811608 31 0.71
01_05_0460 - 22442758-22442932,22443134-22443227,22443355-224435... 29 2.9
01_03_0117 + 12684729-12685886,12685978-12686145,12686292-126863... 29 2.9
12_02_0674 - 21745321-21746223,21746229-21747608 29 3.8
08_02_1035 - 23840606-23841109,23841194-23841199 29 3.8
03_02_0657 + 10225503-10226114,10226563-10226879,10226977-102270... 29 3.8
02_01_0130 - 938530-939990 29 3.8
01_07_0122 - 41196081-41196205,41197561-41198245,41198961-411993... 29 5.0
06_02_0175 - 12624608-12625297 28 6.6
04_04_1107 - 30954647-30954769,30955052-30955141,30955309-309556... 28 6.6
04_04_0323 - 24392043-24393021,24393135-24393544 28 6.6
02_03_0231 - 16636377-16636403,16636590-16636645,16636793-166368... 28 6.6
01_06_0090 + 26358051-26359157,26359582-26359701,26359968-263600... 28 6.6
06_03_0382 - 20142830-20144329 28 8.8
>12_02_0785 +
23135764-23135973,23136061-23136713,23136822-23136903,
23137031-23137113,23137229-23137361,23137493-23137664,
23137929-23138656
Length = 686
Score = 61.3 bits (142), Expect = 8e-10
Identities = 49/159 (30%), Positives = 68/159 (42%), Gaps = 27/159 (16%)
Frame = +1
Query: 334 KLKILAFHGYRQNGTVFRAKIGSFRKAVAKYAQLTFISAP------HKVLNDG------- 474
KLKIL HG+RQN + F+ + + K + A L FI AP +K D
Sbjct: 451 KLKILCLHGFRQNASNFKGRTSALAKKLKHIADLVFIDAPHELSFVYKPNPDHCSGRSSL 510
Query: 475 -SGSEDSRSWWFNSEDNTFSG----KCLGGP---------AVGFEETLRLIELVVEEHGP 612
SG+ + W + ++ F K P GFEE+ +E + + G
Sbjct: 511 PSGTPKRKYAWLVAPNSIFYAEHDWKIADAPFDPLQYQQQTDGFEESYAYLEHAISQMGN 570
Query: 613 FHGFMGFSQGACLVGLLAAMQQKGYLKYAFDFAIFLSGF 729
G +GFSQGA + L QQK F F IF SG+
Sbjct: 571 IDGILGFSQGAAMAALFCRQQQKTCGSLKFRFGIFCSGY 609
>04_04_0055 +
22403608-22403865,22403977-22404075,22404172-22404213,
22404350-22404479,22405118-22405219,22405960-22406066
Length = 245
Score = 57.2 bits (132), Expect = 1e-08
Identities = 38/119 (31%), Positives = 57/119 (47%), Gaps = 4/119 (3%)
Frame = +1
Query: 340 KILAFHGYRQNGTVFRAKI-GSFRKAVAKYAQLTFISAPHKV--LNDGSGSEDSRSW-WF 507
+ L HG+R +G + R ++ G + V L F AP +D G D + WF
Sbjct: 23 RFLCLHGFRTSGEIMRKQVVGKWPADVTARLDLVFADAPFPAEGKSDVEGIFDPPYYEWF 82
Query: 508 NSEDNTFSGKCLGGPAVGFEETLRLIELVVEEHGPFHGFMGFSQGACLVGLLAAMQQKG 684
+ N + F+E L IE ++ + GPF G MGFSQG+ L G L +Q++G
Sbjct: 83 QFDKNFTEYR-------NFDECLNYIEELMIKEGPFDGLMGFSQGSILSGALPGLQEQG 134
>07_03_1738 -
29141829-29141989,29142112-29142343,29142751-29142792,
29143312-29143410,29143575-29143667,29143742-29143876,
29144251-29144290,29144475-29144844,29146575-29146650
Length = 415
Score = 42.7 bits (96), Expect = 3e-04
Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 7/124 (5%)
Frame = +1
Query: 334 KLKILAFHGYRQNGTVFRAKIGSFRKAVAKYAQLTFISAPHKVLNDGSGSEDSRSW---- 501
K K+L HG+R +G+ + +I + ++ + + F P + G SE +
Sbjct: 174 KFKVLCLHGFRTSGSFLKKQISKWNPSIFQQFDMVF---PDGIFPAGGKSEIEGIFPPPY 230
Query: 502 --WFN-SEDNTFSGKCLGGPAVGFEETLRLIELVVEEHGPFHGFMGFSQGACLVGLLAAM 672
WF ++D T +E + + + ++GPF G +GFSQGA L LL
Sbjct: 231 FEWFQFNKDFT--------EYTNLDECISYLCDYMVKNGPFDGLLGFSQGATLSALLIGY 282
Query: 673 QQKG 684
Q +G
Sbjct: 283 QAQG 286
>03_02_0645 + 10133658-10134140,10134280-10134627,10134787-10135131
Length = 391
Score = 34.3 bits (75), Expect = 0.10
Identities = 25/104 (24%), Positives = 41/104 (39%)
Frame = -2
Query: 677 CCMAANKPTKHAPCEKPINPWKGPCSSTTNSINLKVSSKPTAGPPKHLPLNVLSSELNHH 498
C +A +P +P++ S++ S+++ SS A PP PL + L H
Sbjct: 3 CTVAIPSSPVFSPSRRPLSCKAASASASPESVSVAASSPAQAAPPAGSPLRPFA--LRAH 60
Query: 497 ERESSLPLPSFKTL*GAEIKVSCAYLATAFRNDPILALNTVPFC 366
RE + P P A + + R P++ VP C
Sbjct: 61 LREEATPSPQPSAAAAAAVSAPAGSVLKRRRPAPLV----VPVC 100
>02_02_0671 - 12811102-12811608
Length = 168
Score = 31.5 bits (68), Expect = 0.71
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = -2
Query: 668 AANKPTKHAPCEKPINPWKGPCSSTTNSINLKVSSKPT 555
A NKP H+P KP +P PCS V ++PT
Sbjct: 119 ARNKPATHSPLPKPYSPTLPPCSLPQKHRFNVVHTQPT 156
>01_05_0460 -
22442758-22442932,22443134-22443227,22443355-22443519,
22444013-22444134,22445024-22445106,22445251-22445372,
22445668-22445695
Length = 262
Score = 29.5 bits (63), Expect = 2.9
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +1
Query: 616 HGFMGFSQGACLVGLLAAMQQKGYLKYAFDFA 711
HGF+ + ++ L+AA+ +KG + FDF+
Sbjct: 44 HGFISTKNDSLILDLMAALTKKGISVFRFDFS 75
>01_03_0117 +
12684729-12685886,12685978-12686145,12686292-12686336,
12686438-12687280
Length = 737
Score = 29.5 bits (63), Expect = 2.9
Identities = 11/27 (40%), Positives = 12/27 (44%)
Frame = -3
Query: 667 PPISPPNMLPVRNP*IHGKVHAPPPPT 587
PP PP + P P H P PPT
Sbjct: 262 PPSFPPQLAPTMPPPAHAPAETPAPPT 288
>12_02_0674 - 21745321-21746223,21746229-21747608
Length = 760
Score = 29.1 bits (62), Expect = 3.8
Identities = 16/59 (27%), Positives = 27/59 (45%)
Frame = -2
Query: 638 CEKPINPWKGPCSSTTNSINLKVSSKPTAGPPKHLPLNVLSSELNHHERESSLPLPSFK 462
C P++ G SST ++ L S+ T+ P PL+ + ++ R L P+ K
Sbjct: 577 CTSPLSTATGKTSSTPSTSPLSTSTSKTSSTPSTSPLSSSTIKIPTTARTGELSTPTDK 635
>08_02_1035 - 23840606-23841109,23841194-23841199
Length = 169
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = +3
Query: 594 GGGAWTFPWIYGFLTGSMFGGLIGGHAT 677
GGG T W G TG+ GG +GG AT
Sbjct: 73 GGGVVTGGWAAGGDTGATAGGRVGGVAT 100
>03_02_0657 +
10225503-10226114,10226563-10226879,10226977-10227088,
10227292-10227423,10227519-10227593
Length = 415
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -3
Query: 667 PPISPPNMLPVRNP*IHGKVHAPPPPTQLISKFLQN 560
PP SP P+ N G + PPPP L S+ L++
Sbjct: 114 PPPSPTYTQPIVNARKEGGMAPPPPPPPLPSRLLKS 149
>02_01_0130 - 938530-939990
Length = 486
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +3
Query: 627 GFL-TGSMFGGLIGGHATKRIFKVCLR 704
GF+ TG M+GGLIGG+A + C R
Sbjct: 430 GFVPTGDMYGGLIGGYAAEGRMGRCRR 456
>01_07_0122 -
41196081-41196205,41197561-41198245,41198961-41199329,
41199405-41199514,41200539-41200833
Length = 527
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -3
Query: 694 TLNILFVAWPPISPPNMLPVRNP*IHGKVHAPPPP 590
T N A P PP+ L RNP +H + P PP
Sbjct: 413 TANGHHFASPVALPPHSLSPRNPNVHSRSPIPSPP 447
>06_02_0175 - 12624608-12625297
Length = 229
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 594 GGGAWTFPWIYGFLTGSMFGGLIGG 668
GG +W++ W +G+ T S GG GG
Sbjct: 77 GGSSWSYGWGWGWGTDSGGGGSSGG 101
>04_04_1107 -
30954647-30954769,30955052-30955141,30955309-30955617,
30955732-30955842,30955945-30956379,30956452-30956610,
30957044-30957994,30959016-30959483
Length = 881
Score = 28.3 bits (60), Expect = 6.6
Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Frame = +1
Query: 361 YRQNGTVFRAKIGSFRKAV-AKYAQLTFISAPHKVLNDGSGSEDSRSWWFNSEDNTFSGK 537
Y GT+ +AKI K++ K Q F + + + + ++SW + +
Sbjct: 742 YGLTGTIDKAKIAEIAKSIPGKRGQQKFSQEEVQQMINHALQGLNQSW--EEKFKSLEQS 799
Query: 538 CLGGPAVGFEETLRLIELVVEEHGP 612
G P +G + + I+LV +H P
Sbjct: 800 VRGAPLLGVDHETQEIDLVTLQHAP 824
>04_04_0323 - 24392043-24393021,24393135-24393544
Length = 462
Score = 28.3 bits (60), Expect = 6.6
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Frame = -2
Query: 728 NPDRNIAKSK----AYFKYPFCCMAANKPTKHAPCEKPINPWK-GPCSSTTNSINLKVSS 564
+P N AK K A +PFC + A KP A P + + SS+++S +S
Sbjct: 209 SPSPNRAKGKRQPGAASCFPFCSVGATKPAASADSPSPTSTSRTASASSSSSSSTATTAS 268
Query: 563 KPTA 552
TA
Sbjct: 269 SSTA 272
>02_03_0231 -
16636377-16636403,16636590-16636645,16636793-16636853,
16637590-16637649,16638007-16638096,16638775-16638906,
16639016-16639293,16639916-16639949,16640036-16640105,
16641170-16641282,16641654-16641836,16642106-16642283,
16642958-16643142,16643347-16643477,16643620-16643772,
16643849-16643995,16644662-16644737
Length = 657
Score = 28.3 bits (60), Expect = 6.6
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Frame = +1
Query: 451 PHKVLN-DGSGSEDSRSWWFNSEDNTFSGKCLGGP-AVGFEETLRLIELVVEEHGPFHGF 624
PH+ L+ +GSG D+++ S FSG GG G RLI ++ + G H
Sbjct: 45 PHRKLDREGSGRHDNKTQLLRSSSGGFSGAENGGKLGHGSPSRDRLIYVLTQLIGQ-HVD 103
Query: 625 MGFSQGACLVGLLAA 669
+ G+ + G+L A
Sbjct: 104 VHVKNGSIISGILHA 118
>01_06_0090 +
26358051-26359157,26359582-26359701,26359968-26360099,
26360194-26360375,26360488-26360602,26362001-26362135,
26362261-26362395
Length = 641
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -3
Query: 667 PPISPPNMLPVRNP*IHGKVHAPPPP 590
PPI PP +P + + G+ APPPP
Sbjct: 270 PPIPPPPPMPALS--VCGRAAAPPPP 293
>06_03_0382 - 20142830-20144329
Length = 499
Score = 27.9 bits (59), Expect = 8.8
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = -2
Query: 602 SSTTNSINLKVSSKPTAGPPKHLPLNVLS---SELNHHERESSLPLP 471
+ T S + S P AG P+ + +V + SEL+ E +SLPLP
Sbjct: 300 TDTIESSSSSESPTPVAGTPRGMHTSVSAPALSELDRMEDSASLPLP 346
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,431,846
Number of Sequences: 37544
Number of extensions: 423481
Number of successful extensions: 1300
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1294
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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