Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4c21
         (732 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70680-1|CAA94571.1|  221|Caenorhabditis elegans Hypothetical pr...   119   2e-27
AC024830-9|ABQ13052.1| 1594|Caenorhabditis elegans Hypothetical ...    32   0.36 
Z82265-5|CAB05175.1|  334|Caenorhabditis elegans Hypothetical pr...    30   1.5  
AC024754-1|AAK71405.1|  394|Caenorhabditis elegans Hypothetical ...    30   1.9  
AL132847-1|CAB63371.1|  375|Caenorhabditis elegans Hypothetical ...    29   4.5  
Z68753-3|CAA92988.3|  984|Caenorhabditis elegans Hypothetical pr...    28   5.9  
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en...    28   5.9  
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET...    28   5.9  
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET...    28   5.9  
Z73970-3|CAA98242.2|  773|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>Z70680-1|CAA94571.1|  221|Caenorhabditis elegans Hypothetical
           protein C25G4.2 protein.
          Length = 221

 Score =  119 bits (286), Expect = 2e-27
 Identities = 65/138 (47%), Positives = 83/138 (60%), Gaps = 2/138 (1%)
 Frame = +1

Query: 322 TEQPKLKILAFHGYRQNGTVFRAKIGSFRKAVAKYAQLTFISAPHKVLNDGSGSEDSRSW 501
           + QPKL+IL  HGYRQ    FR K GS RK V   A+  F++  H V  D    + SR+W
Sbjct: 2   SSQPKLRILCLHGYRQCDQSFRQKTGSTRKLVKSLAEFEFVNGVHSVAVD-EHVDSSRAW 60

Query: 502 WF-NSEDNTFSGKCLGGPAVGFEETLRLIELVVEEHGPFHGFMGFSQGACLVGLLAAMQQ 678
           WF N+E  +FS +     AVGFEE++  +   +EE+GPF G +GFSQGA +V LL A  Q
Sbjct: 61  WFSNNEAMSFSSRESTEVAVGFEESVAAVVKFIEENGPFDGLLGFSQGASMVHLLIAKAQ 120

Query: 679 KGYLKY-AFDFAIFLSGF 729
            G +K     FAIF SGF
Sbjct: 121 LGEIKLPGIRFAIFFSGF 138


>AC024830-9|ABQ13052.1| 1594|Caenorhabditis elegans Hypothetical
            protein Y55F3BR.2 protein.
          Length = 1594

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 19/49 (38%), Positives = 24/49 (48%)
 Frame = -2

Query: 677  CCMAANKPTKHAPCEKPINPWKGPCSSTTNSINLKVSSKPTAGPPKHLP 531
            CC   N P K+A  EKP  P     S+T  +I +   SKP   P +H P
Sbjct: 1397 CCGPKNSP-KNAT-EKPTEPPTTQASTTVGAIIVTKKSKPIKVPAQHCP 1443


>Z82265-5|CAB05175.1|  334|Caenorhabditis elegans Hypothetical
           protein F02H6.7 protein.
          Length = 334

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
 Frame = -2

Query: 686 YPFCCMAANKPTK-HAPCE--KPINPWKGPCSSTTNSI 582
           Y   C+  N+ TK   PC   KPI P    CSS TN I
Sbjct: 190 YNCACIGENQETKFECPCTPMKPIPPTNTDCSSLTNRI 227


>AC024754-1|AAK71405.1|  394|Caenorhabditis elegans Hypothetical
           protein Y32G9B.1 protein.
          Length = 394

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/33 (39%), Positives = 14/33 (42%)
 Frame = -3

Query: 667 PPISPPNMLPVRNP*IHGKVHAPPPPTQLISKF 569
           PP  PP+  P   P   G    PPPP  L   F
Sbjct: 90  PPTPPPSTFPTLPPLTFGTPSTPPPPATLPPMF 122


>AL132847-1|CAB63371.1|  375|Caenorhabditis elegans Hypothetical
           protein Y48G10A.2 protein.
          Length = 375

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 23/91 (25%), Positives = 30/91 (32%), Gaps = 1/91 (1%)
 Frame = +1

Query: 430 QLTFISAPHKVLNDGSGSEDSRSWWFNSEDNTFSGKCLGGPAVGFEETLRLIELVVEEHG 609
           QLT    PH        +    + W N E + FS  C             L  +  E  G
Sbjct: 230 QLTNQDKPHTSFGRRQHASQKNTEWANEEYSPFSSTCSESSTSTLHMAKALQSVDDEVTG 289

Query: 610 PFHGF-MGFSQGACLVGLLAAMQQKGYLKYA 699
            F GF  GF   A    L   ++ + Y   A
Sbjct: 290 GFGGFGFGFGASAVNKSLKGQIKSENYTSIA 320


>Z68753-3|CAA92988.3|  984|Caenorhabditis elegans Hypothetical
           protein ZC518.2 protein.
          Length = 984

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = -3

Query: 655 PPNMLPVRNP*IHGKVHAPPPPTQLISKFLQNPQPDL 545
           PP+  P   P ++G  HAPPPP          P P +
Sbjct: 106 PPSFSPATQPSMNGH-HAPPPPAVSRPPAFPTPPPSV 141


>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
            protein precursor protein.
          Length = 2272

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
 Frame = -2

Query: 722  DRNIAKSKAYFKYPFCCMAANKPTKH--APCEKPINPWKGPCSSTTNSINLKVSSKPTAG 549
            D+  A  K  F  P   +    P++   A C K +N W GP    + S N      P  G
Sbjct: 1828 DQKYASKKHRFPQPGSRVLLEIPSEKLGAQCPKLVNKWSGPYRVISCSEN-SAEITPVLG 1886

Query: 548  PPKHL 534
              KH+
Sbjct: 1887 KRKHI 1891


>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
            protein, isoforma protein.
          Length = 2175

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
 Frame = -2

Query: 722  DRNIAKSKAYFKYPFCCMAANKPTKH--APCEKPINPWKGPCSSTTNSINLKVSSKPTAG 549
            D+  A  K  F  P   +    P++   A C K +N W GP    + S N      P  G
Sbjct: 1731 DQKYASKKHRFPQPGSRVLLEIPSEKLGAQCPKLVNKWSGPYRVISCSEN-SAEITPVLG 1789

Query: 548  PPKHL 534
              KH+
Sbjct: 1790 KRKHI 1794


>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
            protein, isoformb protein.
          Length = 2186

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
 Frame = -2

Query: 722  DRNIAKSKAYFKYPFCCMAANKPTKH--APCEKPINPWKGPCSSTTNSINLKVSSKPTAG 549
            D+  A  K  F  P   +    P++   A C K +N W GP    + S N      P  G
Sbjct: 1742 DQKYASKKHRFPQPGSRVLLEIPSEKLGAQCPKLVNKWSGPYRVISCSEN-SAEITPVLG 1800

Query: 548  PPKHL 534
              KH+
Sbjct: 1801 KRKHI 1805


>Z73970-3|CAA98242.2|  773|Caenorhabditis elegans Hypothetical
           protein C29A12.3a protein.
          Length = 773

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
 Frame = -2

Query: 719 RNIAKSKAYFKYPFCCMAANK-PTKHAPCEKPINPWKGPCSSTTNSINLKVSSKPTAGPP 543
           ++++  K   K P      NK P K +P +K     KGP +S  +S   K         P
Sbjct: 674 KSVSPKKFEKKPPVKSSPVNKSPVKSSPIKKEAEKKKGPVASIFSSSTKKNEKDVKVESP 733

Query: 542 KHLPLNVLSSELNHHERESS 483
             +    L S+ +  + E+S
Sbjct: 734 SPIRKKKLPSDSDESDEETS 753


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,900,497
Number of Sequences: 27780
Number of extensions: 367898
Number of successful extensions: 1010
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1007
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)