Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte4c20
(681 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 34 0.017
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su... 30 0.36
SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 29 0.62
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 29 0.82
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ... 28 1.4
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||... 27 3.3
SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 26 4.4
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 26 4.4
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha... 26 4.4
SPBC2F12.10 |||mitochondrial ribosomal protein subunit L35|Schiz... 26 4.4
SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2 |Schizosacc... 25 7.7
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 25 7.7
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 34.3 bits (75), Expect = 0.017
Identities = 16/42 (38%), Positives = 19/42 (45%)
Frame = +1
Query: 238 CYQNLESKYSESQKVKILNVINDDSQTLSRFDIAKSRLKKFK 363
CY +Y E +K NDD + FD AK LK FK
Sbjct: 522 CYALASDQYPELPVIKAYQGCNDDWNIMDHFDFAKPELKMFK 563
>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex subunit
Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1117
Score = 29.9 bits (64), Expect = 0.36
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +1
Query: 175 FINYFQQQNILNCRSISGSRCCYQNLESKYSE-SQKVKILNVINDDSQTLSR 327
FI ++ NIL R +S + LE KY+E +K+ +L + D + LS+
Sbjct: 864 FIKLMKKVNILESRLLSNPLHNFSELEEKYAEYLRKLALLEEVKDLKKKLSK 915
>SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 481
Score = 29.1 bits (62), Expect = 0.62
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = -3
Query: 349 ILTLLYQTLTMFENHH*LHLVFSLFDFPSIYFPSFDNNIANHLLTYSSKYF 197
I T ++ +FE HH L + ++FD+ P + N +L+ S K F
Sbjct: 286 IYTTVWLLQRLFEAHHSLDPLLTIFDYYLSVSPKDITRLTNAILSLSMKQF 336
>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1133
Score = 28.7 bits (61), Expect = 0.82
Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 2/95 (2%)
Frame = +1
Query: 253 ESKYSESQKVKILNVINDDSQTLSRFDIAKSRLKKFKQWKTSNGQVKTLSDLPLIEGFTD 432
+S SES + L+V + +T+S F +A+ K WKTSNG + D+ E F
Sbjct: 63 DSGVSESWVLDFLSVTGE--KTISEF-LAQ------KIWKTSNGDLNVAVDMYFDESFNI 113
Query: 433 KTAKKLCDS--ILNGPTEEVEQISNKIKGQILHPN 531
K + +S + +++Q+SN + + L N
Sbjct: 114 KNSNPDSESQKDTDASLTQMDQLSNTVSVKDLSIN 148
>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 965
Score = 27.9 bits (59), Expect = 1.4
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +1
Query: 487 EQISNKIKGQILHPNLKESTIKDCKT--VLTVYISVNSVCWTLINKNDYEVVEWQYYG 654
+++ ++ G ++H NL K K+ + +V +S + W + N D +V W YG
Sbjct: 317 KKLRKRLNGDVVH-NLDVPHDKSYKSNYLFSVVLSPHQASWNIYNSFDNSMVLWCPYG 373
>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1116
Score = 26.6 bits (56), Expect = 3.3
Identities = 10/34 (29%), Positives = 23/34 (67%)
Frame = +1
Query: 277 KVKILNVINDDSQTLSRFDIAKSRLKKFKQWKTS 378
K + ++INDDS+ +++ ++K + + K+ +TS
Sbjct: 196 KGTVTSIINDDSRNINKKTLSKQPVSEHKEKQTS 229
>SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 435
Score = 26.2 bits (55), Expect = 4.4
Identities = 19/79 (24%), Positives = 34/79 (43%)
Frame = +1
Query: 439 AKKLCDSILNGPTEEVEQISNKIKGQILHPNLKESTIKDCKTVLTVYISVNSVCWTLINK 618
A + D+IL +E G I H NL+E + + V + N T++NK
Sbjct: 122 ADDILDAILPPGEKEDHPSGFTAVGHIAHMNLREEWLPYKYIIGKVILDKNPSIETVVNK 181
Query: 619 NDYEVVEWQYYGIDYPEGK 675
D +++ + ++ GK
Sbjct: 182 TDTIDTKFRTFQMEVLAGK 200
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 26.2 bits (55), Expect = 4.4
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +3
Query: 84 NVLMILPRVAVSKYVQPITTFLIHL 158
N++ PR++V +VQPIT L+ +
Sbjct: 1214 NMVQSFPRLSVEAHVQPITRSLVRV 1238
>SPAC458.03 |||nuclear telomere cap complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 868
Score = 26.2 bits (55), Expect = 4.4
Identities = 25/89 (28%), Positives = 38/89 (42%)
Frame = +1
Query: 202 ILNCRSISGSRCCYQNLESKYSESQKVKILNVINDDSQTLSRFDIAKSRLKKFKQWKTSN 381
+L C I G C S YS QK+ IL+ I S S+F+ + Q N
Sbjct: 582 LLTCLDICGPVICTNLFVSDYSMRQKILILSCI---SLAASKFNDDDNERLFPSQLLPGN 638
Query: 382 GQVKTLSDLPLIEGFTDKTAKKLCDSILN 468
+ S P IE +D+ +KL +++
Sbjct: 639 LHDQFYS--PTIEKISDELERKLVFPVMS 665
>SPBC2F12.10 |||mitochondrial ribosomal protein subunit
L35|Schizosaccharomyces pombe|chr 2|||Manual
Length = 370
Score = 26.2 bits (55), Expect = 4.4
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +1
Query: 400 SDLPLIEGFTDKTAKKLCDSILNGPTEEVEQISN-KIKGQILHPNLK 537
S + LI+ +++K KKL +L P+E +I ++ QI P ++
Sbjct: 93 SSVKLIQEYSEKVHKKLQAKLLENPSETSPEIERLQVLSQINLPEVR 139
>SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 849
Score = 25.4 bits (53), Expect = 7.7
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +1
Query: 238 CYQNLESKYSESQKVKILNVINDDSQTLSRFDIAKSRLKKF 360
CYQN + YS+ Q ++ + D L +D+ S K F
Sbjct: 697 CYQNANTTYSKFQSLECQTNLED---MLKHYDVEISPAKSF 734
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 25.4 bits (53), Expect = 7.7
Identities = 13/50 (26%), Positives = 23/50 (46%)
Frame = +1
Query: 199 NILNCRSISGSRCCYQNLESKYSESQKVKILNVINDDSQTLSRFDIAKSR 348
N NC +IS + SK++ S I N++ + + LS +S+
Sbjct: 730 NTFNCPAISYFETSFDECFSKFASSDNYIIGNLLKTNQEDLSNLPTFRSQ 779
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,741,815
Number of Sequences: 5004
Number of extensions: 54562
Number of successful extensions: 149
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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