Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte4c20
(681 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0090 - 5564326-5567280 31 0.84
10_01_0154 - 1764554-1764727,1764829-1764927,1765710-1766172,176... 29 4.5
04_01_0288 + 3824337-3826385 29 4.5
01_05_0564 + 23312419-23312987,23314652-23314751,23314832-233150... 28 6.0
12_01_1088 + 11298966-11299086,11299104-11299189,11299298-112993... 28 7.9
08_02_1237 + 25475219-25475916,25476127-25476320,25476407-254773... 28 7.9
06_03_0328 + 19609096-19609657,19609862-19610169 28 7.9
04_03_0050 + 10161245-10161363,10161557-10161686,10161868-101624... 28 7.9
>03_02_0090 - 5564326-5567280
Length = 984
Score = 31.1 bits (67), Expect = 0.84
Identities = 25/105 (23%), Positives = 46/105 (43%), Gaps = 3/105 (2%)
Frame = +1
Query: 289 LNVINDDSQTLSRFDIAKSRLKKFKQWKTSNGQVKTLSDLPLIEGFTDKTAKKLCDSILN 468
LN +DD+ T S + + + K V +++ L + GFT+ + ++LC +
Sbjct: 695 LNADDDDAATASEASLDELEARN-ASIKFLGINVSSVAALRKLSGFTNVSTRRLCLKDMA 753
Query: 469 GP---TEEVEQISNKIKGQILHPNLKESTIKDCKTVLTVYISVNS 594
GP T +S+ + G + L+ I+ C V + I S
Sbjct: 754 GPASLTLLPSTLSDTLGGLDMLERLQHLAIRSCTGVKDIVIDAGS 798
>10_01_0154 -
1764554-1764727,1764829-1764927,1765710-1766172,
1766255-1766541
Length = 340
Score = 28.7 bits (61), Expect = 4.5
Identities = 21/85 (24%), Positives = 38/85 (44%)
Frame = +1
Query: 163 TMVQFINYFQQQNILNCRSISGSRCCYQNLESKYSESQKVKILNVINDDSQTLSRFDIAK 342
T V + F +Q + C ++ G ++E SQ +K+L + N ++ I+
Sbjct: 128 TNVILMQGFFKQLEMGCPAMRGLFLDECSVEDVEISSQTLKVLTIKNTHVSYGNKTTIST 187
Query: 343 SRLKKFKQWKTSNGQVKTLSDLPLI 417
+ K W NG L+D+PL+
Sbjct: 188 PSVTYLKLWSPLNG-TYVLNDMPLL 211
>04_01_0288 + 3824337-3826385
Length = 682
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +1
Query: 310 SQTLSRFDIAKSRLKKFKQWKTSNGQVKTLSDLPLIEGFTDKTAKKLCDSILNGP 474
S + ++++ S K + TS+ KTL+DL + GF D + C S L P
Sbjct: 381 SGRMGQYNMLHSCYHKITKATTSHHWFKTLNDLSTLVGFADWLDMQHCSSNLEIP 435
>01_05_0564 +
23312419-23312987,23314652-23314751,23314832-23315055,
23315212-23316041,23316161-23316275,23316786-23316905,
23317410-23317450,23317546-23317595,23317684-23317719,
23317836-23317856
Length = 701
Score = 28.3 bits (60), Expect = 6.0
Identities = 21/57 (36%), Positives = 30/57 (52%)
Frame = +1
Query: 367 WKTSNGQVKTLSDLPLIEGFTDKTAKKLCDSILNGPTEEVEQISNKIKGQILHPNLK 537
+ S+GQ T S +P E +K A + I+N EEV+Q NK + QIL L+
Sbjct: 639 YSRSSGQ--TSSSVPSRESIANKGASPPRNDIVN---EEVDQRQNKPRRQILRDELQ 690
>12_01_1088 +
11298966-11299086,11299104-11299189,11299298-11299379,
11300817-11301202
Length = 224
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Frame = +1
Query: 403 DLPLIEGFTDKTAKKLCDSILNG----PTEEVEQISNKIKGQILHPNLKESTIKDCKTV 567
++PL++ T + ILN PT+EV +++ + ILH ++ C T+
Sbjct: 159 NMPLLDAMQVPTCARYLKDILNNKRPLPTKEVVKLTEQCSNAILHKLPEKKKYSRCPTI 217
>08_02_1237 +
25475219-25475916,25476127-25476320,25476407-25477302,
25477416-25477490,25477582-25477689,25477780-25477897,
25478007-25478142,25478228-25478372,25478460-25479080,
25479166-25479597
Length = 1140
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Frame = +1
Query: 478 EEVEQISNKIKGQILH-----PNLKESTIKDCKTVLTVYISVNSVCWTLINKNDYEVVEW 642
+E I ++G+I++ PN E I+ VL++Y+S+ ++ W + +N + V
Sbjct: 609 KEPSTIPGNLRGEIVNWLKHSPNEMEGYIRPGCLVLSMYLSMPAIAWDELEENLLQRVNT 668
Query: 643 QYYGID 660
G D
Sbjct: 669 LVQGSD 674
>06_03_0328 + 19609096-19609657,19609862-19610169
Length = 289
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Frame = +1
Query: 373 TSNGQVKTLS-DLPLIEGFTDKTAKKLCDSILNG----PTEEVEQISNKIKGQILHPNLK 537
T G ++ + ++PL++ T + ILN PT EV +++ + QILH +
Sbjct: 184 TRRGVIQKIHINVPLLDAMQVPTYARYLKDILNNKRLLPTTEVVKLTEQCSNQILHKFPE 243
Query: 538 ESTIKDCKTV 567
+ C T+
Sbjct: 244 KKKDPGCPTI 253
>04_03_0050 +
10161245-10161363,10161557-10161686,10161868-10162456,
10162661-10162995
Length = 390
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Frame = +1
Query: 373 TSNGQVKTLS-DLPLIEGFTDKTAKKLCDSILNG----PTEEVEQISNKIKGQILHPNLK 537
T+ G ++ + ++PL++ T + ILN PT EV +++++ ILH K
Sbjct: 276 TTRGVIQKIHINVPLLDAMQVPTYARYLKDILNNKRPLPTTEVVKLTDQCSNVILHKLPK 335
Query: 538 ESTIKDCKTV 567
+ C T+
Sbjct: 336 KKKDPGCPTI 345
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,356,240
Number of Sequences: 37544
Number of extensions: 266230
Number of successful extensions: 683
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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