Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4c20
         (681 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY071634-1|AAL49256.1|  372|Drosophila melanogaster RE67859p pro...    66   4e-11
AE014296-3708|AAF51853.1|  372|Drosophila melanogaster CG14450-P...    66   4e-11
AF492764-2|AAM11674.1|  849|Drosophila melanogaster pol protein ...    29   4.5  
X17551-2|CAA35587.1|  888|Drosophila melanogaster protein ( D.me...    29   7.8  
AY047531-1|AAK77263.1|  888|Drosophila melanogaster GH03753p pro...    29   7.8  

>AY071634-1|AAL49256.1|  372|Drosophila melanogaster RE67859p
           protein.
          Length = 372

 Score = 66.1 bits (154), Expect = 4e-11
 Identities = 46/158 (29%), Positives = 75/158 (47%), Gaps = 12/158 (7%)
 Frame = +1

Query: 223 SGSRCCYQ--NLESKYSESQKVKILNVINDDSQT-LSRFDIAKSRLKKFKQWKTSNGQVK 393
           SG   C Q   L   YS++ ++KIL  IN+ S   ++ +DI K+R  K + WK  +G ++
Sbjct: 25  SGQPECDQAIGLLPAYSDADRLKILKTINESSMNQIANYDITKARATKLQNWKNRHGPLQ 84

Query: 394 TLSDLPLIEGFTDKTAKKLCDSILNGPTEEVEQI-SNKIK----GQILHPNLKESTIKDC 558
            LSD+  +EGF  K   K   S+L  P+    Q+  N+ K       + P + E      
Sbjct: 85  ELSDILYVEGFGLKVTTKFFKSLLAPPSSGSAQVGENRPKTARVAPFITPAMDEGQRSRI 144

Query: 559 KTVLTVYISVNSVCWTLINKNDYE----VVEWQYYGID 660
            + + V I V SV W  +     E    +  WQ++ ++
Sbjct: 145 VSAVGVRIGVTSVSWARLKIGSNEAPCLLTHWQHHELN 182


>AE014296-3708|AAF51853.1|  372|Drosophila melanogaster CG14450-PA
           protein.
          Length = 372

 Score = 66.1 bits (154), Expect = 4e-11
 Identities = 46/158 (29%), Positives = 75/158 (47%), Gaps = 12/158 (7%)
 Frame = +1

Query: 223 SGSRCCYQ--NLESKYSESQKVKILNVINDDSQT-LSRFDIAKSRLKKFKQWKTSNGQVK 393
           SG   C Q   L   YS++ ++KIL  IN+ S   ++ +DI K+R  K + WK  +G ++
Sbjct: 25  SGQPECDQAIGLLPAYSDADRLKILKTINESSMNQIANYDITKARATKLQNWKNRHGPLQ 84

Query: 394 TLSDLPLIEGFTDKTAKKLCDSILNGPTEEVEQI-SNKIK----GQILHPNLKESTIKDC 558
            LSD+  +EGF  K   K   S+L  P+    Q+  N+ K       + P + E      
Sbjct: 85  ELSDILYVEGFGLKVTTKFFKSLLAPPSSGSAQVGENRPKTARVAPFITPAMDEGQRSRI 144

Query: 559 KTVLTVYISVNSVCWTLINKNDYE----VVEWQYYGID 660
            + + V I V SV W  +     E    +  WQ++ ++
Sbjct: 145 VSAVGVRIGVTSVSWARLKIGSNEAPCLLTHWQHHELN 182


>AF492764-2|AAM11674.1|  849|Drosophila melanogaster pol protein
           protein.
          Length = 849

 Score = 29.5 bits (63), Expect = 4.5
 Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
 Frame = +1

Query: 469 GPTEEVEQISNKIKGQILHPNLKESTIKDCKT-VLTVYISVNSVCWTLINKNDYEVVEWQ 645
           GP   +E      K QI+H + KE T++  K  +L  + S NS  + + +  D+E+++  
Sbjct: 628 GPNSSIEH-ETYFKKQIIHISYKEMTLEAAKQYLLNHFCSKNSALY-IESDADFEMIQNA 685

Query: 646 YYGIDYPEGKKI 681
           Y     P+  KI
Sbjct: 686 YTTTMNPKCTKI 697


>X17551-2|CAA35587.1|  888|Drosophila melanogaster protein (
           D.melanogaster white-one mutant DNA with Doc retroposon,
           inserted inwhite locuspromoter region.  ).
          Length = 888

 Score = 28.7 bits (61), Expect = 7.8
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +1

Query: 607 LINKNDYEVVEWQYYGIDYPEGK 675
           L NKN++ +  + +YG ++P+GK
Sbjct: 40  LTNKNNFHIPGYLFYGTNHPDGK 62


>AY047531-1|AAK77263.1|  888|Drosophila melanogaster GH03753p
           protein.
          Length = 888

 Score = 28.7 bits (61), Expect = 7.8
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +1

Query: 607 LINKNDYEVVEWQYYGIDYPEGK 675
           L NKN++ +  + +YG ++P+GK
Sbjct: 40  LTNKNNFHIPGYLFYGTNHPDGK 62


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,177,753
Number of Sequences: 53049
Number of extensions: 501052
Number of successful extensions: 1252
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1250
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2971922400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)