Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4c19
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|...    26   4.1  
SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha...    26   5.4  
SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch...    26   5.4  
SPAC977.01 |||S. pombe specific 5Tm protein family|Schizosacchar...    26   5.4  
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha...    26   5.4  

>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 623

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +2

Query: 236 LKKSNNPCVVYN*KRLTSRKIKREKPLKYTDL 331
           LKKS  P    N  RL + +   +KPLK +DL
Sbjct: 66  LKKSQQPLNEENYPRLQTTENNLQKPLKISDL 97


>SPBC1348.02 |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 344

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 15/66 (22%), Positives = 25/66 (37%)
 Frame = +3

Query: 432 IFVVILEFFWVYFYNDLYEHSDCFXXXXXXXXXXXXVRQILALLHEVVQEIMYIS*AKQP 611
           I + +   +W+  Y D+Y  S+ F            V  I  LL +      Y + +K  
Sbjct: 207 IVIALCSVYWISLYKDVYVVSEIFDMIQYEVSPAIWVYSICHLLKQCTSVTTYENASKAR 266

Query: 612 MCRAIL 629
             R +L
Sbjct: 267 FFRRML 272


>SPBPB2B2.19c |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 344

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 15/66 (22%), Positives = 25/66 (37%)
 Frame = +3

Query: 432 IFVVILEFFWVYFYNDLYEHSDCFXXXXXXXXXXXXVRQILALLHEVVQEIMYIS*AKQP 611
           I + +   +W+  Y D+Y  S+ F            V  I  LL +      Y + +K  
Sbjct: 207 IVIALCSVYWISLYKDVYVVSEIFDMIQYEVSPAIWVYSICHLLKQCTSVTTYENASKAR 266

Query: 612 MCRAIL 629
             R +L
Sbjct: 267 FFRRML 272


>SPAC977.01 |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1||Partial|Manual
          Length = 316

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 15/66 (22%), Positives = 25/66 (37%)
 Frame = +3

Query: 432 IFVVILEFFWVYFYNDLYEHSDCFXXXXXXXXXXXXVRQILALLHEVVQEIMYIS*AKQP 611
           I + +   +W+  Y D+Y  S+ F            V  I  LL +      Y + +K  
Sbjct: 179 IVIALCSVYWISLYKDVYVVSEIFDMIQYEVSPAIWVYSICHLLKQCTSVTTYENASKAR 238

Query: 612 MCRAIL 629
             R +L
Sbjct: 239 FFRRML 244


>SPAC750.05c |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 344

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 15/66 (22%), Positives = 25/66 (37%)
 Frame = +3

Query: 432 IFVVILEFFWVYFYNDLYEHSDCFXXXXXXXXXXXXVRQILALLHEVVQEIMYIS*AKQP 611
           I + +   +W+  Y D+Y  S+ F            V  I  LL +      Y + +K  
Sbjct: 207 IVIALCSVYWISLYKDVYVVSEIFDMIQYEVFPAIWVYSICHLLKQCTSVTTYENASKAR 266

Query: 612 MCRAIL 629
             R +L
Sbjct: 267 FFRRML 272


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,729,190
Number of Sequences: 5004
Number of extensions: 55011
Number of successful extensions: 123
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)