Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4c19
         (651 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41598| Best HMM Match : HLH (HMM E-Value=2.2)                       29   3.3  
SB_20689| Best HMM Match : Gelsolin (HMM E-Value=0.00029)              28   7.6  

>SB_41598| Best HMM Match : HLH (HMM E-Value=2.2)
          Length = 519

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = -2

Query: 194 RITRWSAIR-ILYILVQYIYHWTMNDNKSIHISSNTER 84
           RI+R   IR  ++ + QY+ H+T +DN S +  S T R
Sbjct: 380 RISRSQTIRHTIHAVRQYVMHFTQSDNTSYNSRSQTIR 417


>SB_20689| Best HMM Match : Gelsolin (HMM E-Value=0.00029)
          Length = 1866

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = -1

Query: 609 VASPMKCTLFLGRLHEAVQEFVARHRSQDDEARRRQSSRYAHTDHYKNKP 460
           V S  K  +   R+ + V E +      DD  R ++ +RY  T   K KP
Sbjct: 542 VRSWTKVEIVSKRVEKEVAELIKTANELDDSPREQRRARYRKTSDGKEKP 591


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,399,947
Number of Sequences: 59808
Number of extensions: 361449
Number of successful extensions: 857
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 851
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)