Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4c17
         (739 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.05 |pcd1||coenzyme A diphosphatase |Schizosaccharomyces ...    70   3e-13
SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces pombe...    33   0.056
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac...    32   0.074
SPBP35G2.12 |||nucleoside diphosphate-sugar hydrolase |Schizosac...    29   0.91 
SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr 3||...    26   4.9  
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    25   8.5  
SPBC56F2.11 |met6||homoserine O-acetyltransferase|Schizosaccharo...    25   8.5  

>SPAC6G9.05 |pcd1||coenzyme A diphosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 285

 Score = 70.1 bits (164), Expect = 3e-13
 Identities = 48/147 (32%), Positives = 78/147 (53%), Gaps = 2/147 (1%)
 Frame = +3

Query: 297 SRERCLMNLKRAKVP-KFGSTPTATAAVLVPLCRVAEVPSLLYTVRSSNLRTNSGQISFP 473
           S +  L++  R  +P K  + PT  A+VL+PL   ++  SLL T RS NLR+++GQ+ FP
Sbjct: 92  SHQIYLLHKNRPTLPLKPTNQPTRFASVLMPLVNTSQGASLLLTQRSPNLRSHAGQMCFP 151

Query: 474 GGKTDKNE-TPIETALRETDEEIGLSAKEIDVWGHGPAVPGRNNKIMITPVIGTIFNFKP 650
           GG+ + ++ +    ALRET EEIG            P +  R+ K  I   +   F+ + 
Sbjct: 152 GGRVEPSDGSHYYAALRETYEEIGFLPNFFTYLTTFPPLFTRDEKTEIRAYLA--FSVQT 209

Query: 651 ESLNINVKEVAEVFTVPIEMLCDTKNQ 731
              ++   EV ++F VP+    + K+Q
Sbjct: 210 SLPSLGTGEVKDLFYVPLTSFLNPKHQ 236


>SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 329

 Score = 32.7 bits (71), Expect = 0.056
 Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 5/63 (7%)
 Frame = +3

Query: 384 PLC-RVAEVPSLLYTVRSSNLRTN-SGQISFPGGK---TDKNETPIETALRETDEEIGLS 548
           P C  +  VP +L   RS       SG ++ PGG    TDK++  I+TA RET EE+G+ 
Sbjct: 50  PQCIPITSVPYVLLIQRSFRDTDRWSGHMALPGGTRSLTDKSD--IQTAHRETLEEVGID 107

Query: 549 AKE 557
            ++
Sbjct: 108 LRK 110


>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
           Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 32.3 bits (70), Expect = 0.074
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +3

Query: 468 FPGGKTDKNETPIETALRETDEEIG 542
           FP GK DK+E+ ++ A+RE  EE G
Sbjct: 125 FPKGKIDKDESDVDCAIREVYEETG 149


>SPBP35G2.12 |||nucleoside diphosphate-sugar hydrolase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 205

 Score = 28.7 bits (61), Expect = 0.91
 Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
 Frame = +3

Query: 462 ISFPGGKTDKNETPIETALRETDEEIGLSAKEID---VWGHGPAVPGRNNKIMITPVIGT 632
           I  P G  D  E+  + A+RE  EE G     +D   V  + P +   N KI    ++  
Sbjct: 85  IEIPAGLVDSKESCEDAAIRELREETGYVGTVMDSTTVMYNDPGLTNANLKI----ILAD 140

Query: 633 IFNFKPESLN 662
           I   KPE+ N
Sbjct: 141 IDMSKPENQN 150


>SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 465

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -3

Query: 536 LFISLPKCCFNGSFIFISFS 477
           +F+ LP CC +  F+ +SFS
Sbjct: 277 VFLFLPVCCLDPHFLHLSFS 296


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
            Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -3

Query: 737  IMLVLGVT*HLNWDCKNFCYFFHIDIQ*FWFKIEYS 630
            + LVL +T + NWD +     +H + Q FW  +E S
Sbjct: 1005 LRLVLNITPNFNWDMR-----YHGNSQMFWIFVEDS 1035


>SPBC56F2.11 |met6||homoserine
           O-acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 489

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = +3

Query: 348 GSTPTATAAVLVPLCRVAEVPSL--LYTVRSSNLRTNS 455
           GS+PT+ +A+  P   V+ +PSL    T  SS+L  +S
Sbjct: 294 GSSPTSESALNSPASSVSSLPSLGASQTTDSSSLNQSS 331


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,889,093
Number of Sequences: 5004
Number of extensions: 60181
Number of successful extensions: 146
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)