Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte4c17
(739 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0479 + 17627605-17627839,17628965-17629107,17630018-176301... 68 9e-12
08_02_0481 + 17636359-17636593,17638136-17638278,17638431-176385... 66 3e-11
05_02_0108 + 6681656-6681944,6682041-6682183,6682548-6682610 50 2e-06
04_04_1371 + 32995337-32995358,32995745-32995822,32995876-329960... 28 6.7
02_01_0570 - 4195409-4195443,4196245-4196333,4196539-4196630,419... 28 6.7
08_02_0957 + 23033602-23034749,23035519-23035765,23036598-230367... 28 8.9
06_01_0404 + 2892750-2892984,2893118-2893327,2893415-2893837,289... 28 8.9
>08_02_0479 +
17627605-17627839,17628965-17629107,17630018-17630137,
17630497-17630721
Length = 240
Score = 67.7 bits (158), Expect = 9e-12
Identities = 43/116 (37%), Positives = 65/116 (56%), Gaps = 2/116 (1%)
Frame = +3
Query: 369 AAVLVPLCR-VAEVPSLLYTVRSSNLRTNSGQISFPGGKTDKNET-PIETALRETDEEIG 542
AAVL+ L R A +L T RSS L ++SG++S PGGK ++ + TALRE EEIG
Sbjct: 49 AAVLICLFRGAAGELRVLLTKRSSKLSSHSGEVSLPGGKAEEGDADDAATALREAKEEIG 108
Query: 543 LSAKEIDVWGHGPAVPGRNNKIMITPVIGTIFNFKPESLNINVKEVAEVFTVPIEM 710
L + V + + +++ PV+G + + + +NV EV +F VP+EM
Sbjct: 109 LDPASVTVVASLEHFLSK-HLLVVVPVVGILSDIQAFKPVLNVDEVDSIFDVPLEM 163
>08_02_0481 +
17636359-17636593,17638136-17638278,17638431-17638550,
17638916-17639116
Length = 232
Score = 66.1 bits (154), Expect = 3e-11
Identities = 35/107 (32%), Positives = 62/107 (57%), Gaps = 1/107 (0%)
Frame = +3
Query: 414 LLYTVRSSNLRTNSGQISFPGGKTDKNET-PIETALRETDEEIGLSAKEIDVWGHGPAVP 590
++ T RSS+L T+SG+++ PGGK ++ + TALRE EEIGL + V
Sbjct: 65 VILTKRSSSLSTHSGEVALPGGKAEEGDADDAATALREAKEEIGLDPSLVTVVASLEHFL 124
Query: 591 GRNNKIMITPVIGTIFNFKPESLNINVKEVAEVFTVPIEMLCDTKNQ 731
+ + +++ P++G + + + +NV EV ++F VP+EM +N+
Sbjct: 125 SK-HLLVVVPIVGILSDIEAFKPVLNVDEVDDIFDVPLEMFLKDENR 170
>05_02_0108 + 6681656-6681944,6682041-6682183,6682548-6682610
Length = 164
Score = 50.0 bits (114), Expect = 2e-06
Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 3/79 (3%)
Frame = +3
Query: 339 PKFGSTPTATAAVLVPLCRVAEV--PSLLYTVRSSNLRTNSGQISFPGGKTDKNET-PIE 509
P + + P AAVLV L P ++ T R+++L ++SG++S PGGK ++ +
Sbjct: 56 PAYLAAPKGYAAVLVCLFEDPHGGDPRVILTKRAASLSSHSGEVSLPGGKVEEGDADATA 115
Query: 510 TALRETDEEIGLSAKEIDV 566
TALRE EEIGL + +
Sbjct: 116 TALREAKEEIGLDPALVSI 134
>04_04_1371 +
32995337-32995358,32995745-32995822,32995876-32996019,
32997595-32997930,32998014-32998166,32998286-32998501,
32998600-33000695
Length = 1014
Score = 28.3 bits (60), Expect = 6.7
Identities = 17/47 (36%), Positives = 21/47 (44%)
Frame = -3
Query: 644 KIEYSTNYWGDHYFVITPRYCRTMAPDVYFFSRKPNLFISLPKCCFN 504
KI+ + W D ITP C+ P + FS L SLP C N
Sbjct: 737 KIKTLSLGWNDFEGQITPNLCKLKCPRIIDFSHN-KLSGSLPPCVGN 782
>02_01_0570 -
4195409-4195443,4196245-4196333,4196539-4196630,
4196726-4196833,4196984-4197118,4197211-4197256,
4197358-4197458,4198285-4198422,4198503-4198601,
4198740-4198856,4199195-4199356,4199734-4199793,
4200371-4200538,4200608-4200718,4201401-4201499,
4201579-4201644,4202407-4202490,4202563-4202605,
4202684-4202739,4202817-4202925,4203442-4203524,
4203842-4203925,4204311-4204382,4204462-4204539,
4204633-4204716,4204806-4204876,4205943-4206012,
4206495-4206626,4207168-4207284,4208185-4208367
Length = 963
Score = 28.3 bits (60), Expect = 6.7
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +3
Query: 162 LNR*TISSFKDLKN*IKLNTYSTCNLLNEMCAKSPFSVNSIFCLTSRERCLM 317
L + T+ +KN NT+ C + NE ++ P+ +N IF SR +
Sbjct: 832 LTQDTLDHANKVKNTFIFNTFVLCQVFNEFNSRKPYELN-IFDGVSRNHLFL 882
>08_02_0957 +
23033602-23034749,23035519-23035765,23036598-23036744,
23036849-23037076
Length = 589
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +3
Query: 492 NETPIETALRETDEEIGLSAKEI 560
+E +E A RETDEEI + A+E+
Sbjct: 516 SEKKLEDAKRETDEEIQMCAREL 538
>06_01_0404 +
2892750-2892984,2893118-2893327,2893415-2893837,
2894300-2894514
Length = 360
Score = 27.9 bits (59), Expect = 8.9
Identities = 15/52 (28%), Positives = 20/52 (38%)
Frame = +2
Query: 329 G*GSKVRKYTNSYGCGFSAFVSCCRSSFSIIYSKVFKFTNKQWSNIFSGWKN 484
G G Y N CG S +C S S+ + + T + I GW N
Sbjct: 300 GAGGGKYNYQNGARCGMSGAYACSNPSSSLSWDGI-HLTEAAYKQIADGWVN 350
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,791,122
Number of Sequences: 37544
Number of extensions: 325648
Number of successful extensions: 727
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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