Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte4c17
(739 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U55855-1|AAA98017.1| 188|Caenorhabditis elegans Nudix family pr... 103 1e-22
AL110500-14|CAB54476.1| 234|Caenorhabditis elegans Hypothetical... 51 1e-06
Z75547-6|CAA99903.1| 377|Caenorhabditis elegans Hypothetical pr... 32 0.49
Z82269-7|CAB05204.2| 786|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z82269-6|CAB05206.3| 809|Caenorhabditis elegans Hypothetical pr... 31 1.1
DQ143943-1|AAZ73241.1| 770|Caenorhabditis elegans RNA-decapping... 31 1.1
AL021488-8|CAJ43919.1| 786|Caenorhabditis elegans Hypothetical ... 31 1.1
AL021488-7|CAJ43918.1| 809|Caenorhabditis elegans Hypothetical ... 31 1.1
Z66564-6|CAA91473.4| 737|Caenorhabditis elegans Hypothetical pr... 30 1.5
AY887904-1|AAX34416.1| 737|Caenorhabditis elegans anion transpo... 30 1.5
Z35602-2|CAA84671.3| 824|Caenorhabditis elegans Hypothetical pr... 29 3.4
U64858-2|AAN84866.1| 1310|Caenorhabditis elegans Roller: helical... 29 4.5
U64858-1|AAN84864.1| 2456|Caenorhabditis elegans Roller: helical... 29 4.5
U64855-2|AAB04981.2| 1080|Caenorhabditis elegans Importin beta f... 29 4.5
AF098989-2|AAK18954.3| 346|Caenorhabditis elegans Hypothetical ... 29 4.5
>U55855-1|AAA98017.1| 188|Caenorhabditis elegans Nudix family
protein 3 protein.
Length = 188
Score = 103 bits (247), Expect = 1e-22
Identities = 52/115 (45%), Positives = 77/115 (66%), Gaps = 1/115 (0%)
Frame = +3
Query: 372 AVLVPLCRVAEVPSLLYTVRSSNLRTNSGQISFPGGKTDKNETPIETALRETDEEIGLSA 551
+VL+PL V S+L T RS +LR++ G++ FPGG+ D ET ETALRET EEIG++A
Sbjct: 2 SVLIPLVTVDGRDSVLLTKRSIHLRSHRGEVCFPGGRMDPGETTTETALRETFEEIGVNA 61
Query: 552 KEIDVWGHGPAVPGRNNKIMITPVIGTIFNFKP-ESLNINVKEVAEVFTVPIEML 713
+ +++WGH +V R +TP++G I + + E+L +N EV VFT+PI+ L
Sbjct: 62 ESVEIWGHLKSVIRRQADFNVTPIVGYISDERVLENLVVNSDEVQAVFTIPIDEL 116
>AL110500-14|CAB54476.1| 234|Caenorhabditis elegans Hypothetical
protein Y87G2A.14 protein.
Length = 234
Score = 50.8 bits (116), Expect = 1e-06
Identities = 35/117 (29%), Positives = 62/117 (52%), Gaps = 4/117 (3%)
Frame = +3
Query: 399 AEVPSLLYTVRSSNLRTNSGQISFPGGKTD--KNETPIETALRETDEEIGLSAK-EIDVW 569
+E +L VRS LR + G++ FPGG D + TA+RE EE+G++ + V
Sbjct: 41 SEKLKVLLCVRSRQLRRHPGEVCFPGGMMDDEDGQNVRRTAIREAYEEVGVNENDDYLVL 100
Query: 570 GHGPAVPGRNNKIMITPVIGTIFNFKPESLNINVKEVAEVFTVPI-EMLCDTKNQHY 737
G+ PA R ++I P + + +P + +++ EV +F +P+ + L DT + +
Sbjct: 101 GNLPAFRARFG-VLIHPTVALL--RRPPTFVLSIGEVESIFWIPLSQFLEDTHHSTF 154
>Z75547-6|CAA99903.1| 377|Caenorhabditis elegans Hypothetical
protein R11D1.5 protein.
Length = 377
Score = 31.9 bits (69), Expect = 0.49
Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 3/98 (3%)
Frame = +2
Query: 197 KKLNKIKYLQ-YM*PFE*NVC*VSV*CQQHILSHVPRTMF--DESKKG*GSKVRKYTNSY 367
KK+ KYL Y+ FE + + + ++ S+ R + D V K+ NS
Sbjct: 38 KKIGNYKYLMIYICVFEILYTILGLITKPYVHSYTSRVIVIVDVKNSVFSRSVNKFLNSL 97
Query: 368 GCGFSAFVSCCRSSFSIIYSKVFKFTNKQWSNIFSGWK 481
CGF C S F+I + + ++ + F GWK
Sbjct: 98 ICGF---YGCSVSIFAIHFMYRYGALDRNYEKHFKGWK 132
>Z82269-7|CAB05204.2| 786|Caenorhabditis elegans Hypothetical
protein F52G2.1b protein.
Length = 786
Score = 30.7 bits (66), Expect = 1.1
Identities = 22/71 (30%), Positives = 32/71 (45%)
Frame = +3
Query: 330 AKVPKFGSTPTATAAVLVPLCRVAEVPSLLYTVRSSNLRTNSGQISFPGGKTDKNETPIE 509
AK ++ ST A+LV P + + V + FP GK ++ E P +
Sbjct: 231 AKFREYKSTVPTYGAILVD-------PEMDHVVLVQSYFAKGKNWGFPKGKINQAEPPRD 283
Query: 510 TALRETDEEIG 542
A+RET EE G
Sbjct: 284 AAIRETFEETG 294
>Z82269-6|CAB05206.3| 809|Caenorhabditis elegans Hypothetical
protein F52G2.1a protein.
Length = 809
Score = 30.7 bits (66), Expect = 1.1
Identities = 22/71 (30%), Positives = 32/71 (45%)
Frame = +3
Query: 330 AKVPKFGSTPTATAAVLVPLCRVAEVPSLLYTVRSSNLRTNSGQISFPGGKTDKNETPIE 509
AK ++ ST A+LV P + + V + FP GK ++ E P +
Sbjct: 254 AKFREYKSTVPTYGAILVD-------PEMDHVVLVQSYFAKGKNWGFPKGKINQAEPPRD 306
Query: 510 TALRETDEEIG 542
A+RET EE G
Sbjct: 307 AAIRETFEETG 317
>DQ143943-1|AAZ73241.1| 770|Caenorhabditis elegans RNA-decapping
protein protein.
Length = 770
Score = 30.7 bits (66), Expect = 1.1
Identities = 22/71 (30%), Positives = 32/71 (45%)
Frame = +3
Query: 330 AKVPKFGSTPTATAAVLVPLCRVAEVPSLLYTVRSSNLRTNSGQISFPGGKTDKNETPIE 509
AK ++ ST A+LV P + + V + FP GK ++ E P +
Sbjct: 215 AKFREYKSTVPTYGAILVD-------PEMDHVVLVQSYFAKGKNWGFPKGKINQAEPPRD 267
Query: 510 TALRETDEEIG 542
A+RET EE G
Sbjct: 268 AAIRETFEETG 278
>AL021488-8|CAJ43919.1| 786|Caenorhabditis elegans Hypothetical
protein F52G2.1b protein.
Length = 786
Score = 30.7 bits (66), Expect = 1.1
Identities = 22/71 (30%), Positives = 32/71 (45%)
Frame = +3
Query: 330 AKVPKFGSTPTATAAVLVPLCRVAEVPSLLYTVRSSNLRTNSGQISFPGGKTDKNETPIE 509
AK ++ ST A+LV P + + V + FP GK ++ E P +
Sbjct: 231 AKFREYKSTVPTYGAILVD-------PEMDHVVLVQSYFAKGKNWGFPKGKINQAEPPRD 283
Query: 510 TALRETDEEIG 542
A+RET EE G
Sbjct: 284 AAIRETFEETG 294
>AL021488-7|CAJ43918.1| 809|Caenorhabditis elegans Hypothetical
protein F52G2.1a protein.
Length = 809
Score = 30.7 bits (66), Expect = 1.1
Identities = 22/71 (30%), Positives = 32/71 (45%)
Frame = +3
Query: 330 AKVPKFGSTPTATAAVLVPLCRVAEVPSLLYTVRSSNLRTNSGQISFPGGKTDKNETPIE 509
AK ++ ST A+LV P + + V + FP GK ++ E P +
Sbjct: 254 AKFREYKSTVPTYGAILVD-------PEMDHVVLVQSYFAKGKNWGFPKGKINQAEPPRD 306
Query: 510 TALRETDEEIG 542
A+RET EE G
Sbjct: 307 AAIRETFEETG 317
>Z66564-6|CAA91473.4| 737|Caenorhabditis elegans Hypothetical
protein F52D10.1 protein.
Length = 737
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = -3
Query: 563 VYFFSRKPNLFISLPKCCFNGSFIFISFST 474
+YFF P++ + +P FNG F+F++FS+
Sbjct: 615 IYFFL-VPHITVFIPTSIFNGVFLFMAFSS 643
>AY887904-1|AAX34416.1| 737|Caenorhabditis elegans anion
transporter ABTS-2 protein.
Length = 737
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = -3
Query: 563 VYFFSRKPNLFISLPKCCFNGSFIFISFST 474
+YFF P++ + +P FNG F+F++FS+
Sbjct: 615 IYFFL-VPHITVFIPTSIFNGVFLFMAFSS 643
>Z35602-2|CAA84671.3| 824|Caenorhabditis elegans Hypothetical
protein R13G10.2 protein.
Length = 824
Score = 29.1 bits (62), Expect = 3.4
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = +2
Query: 350 KYTNSYGCGFSAFVSCCRSSFSIIYSKVFKFTNKQWSNIFSGWK 481
K T SYG S +CC S FS+ F K + N F+ WK
Sbjct: 70 KKTASYGHRLSKTEACCPSCFSV------AFRGKDYENEFTIWK 107
>U64858-2|AAN84866.1| 1310|Caenorhabditis elegans Roller: helically
twisted, animalsroll when moving protein 3, isoform c
protein.
Length = 1310
Score = 28.7 bits (61), Expect = 4.5
Identities = 37/154 (24%), Positives = 63/154 (40%), Gaps = 12/154 (7%)
Frame = +3
Query: 255 AKSPFSVNSIFCLTSRERCLMNLKRAKVPKFGSTPTATAAVLVPLCRVAEVPSLLYTV-- 428
+ P+ S F L S + + ++ K GS T + C+ +P Y +
Sbjct: 239 SSQPYPERSCFELPSSKGIVFSI--VNEGKTGSFLEVTKSSSSSSCQEVSMPQTQYEIYF 296
Query: 429 ------RSSNLRTNSGQISFPGGKTDKNETPIE---TALRETDEEIGLSAKEIDVWGHG- 578
+ ++R+ S +I G DK ET + T L G+SA + G G
Sbjct: 297 TRKNTDKVKHVRSFSDRIHVENGILDK-ETDYDVTVTWLNRYSPASGVSASKSFRTGFGY 355
Query: 579 PAVPGRNNKIMITPVIGTIFNFKPESLNINVKEV 680
P+ P + I +TP ++ PE+LN + E+
Sbjct: 356 PSAPRDPHAIPVTPDTVYLYWNLPETLNAPISEI 389
>U64858-1|AAN84864.1| 2456|Caenorhabditis elegans Roller: helically
twisted, animalsroll when moving protein 3, isoform a
protein.
Length = 2456
Score = 28.7 bits (61), Expect = 4.5
Identities = 37/154 (24%), Positives = 63/154 (40%), Gaps = 12/154 (7%)
Frame = +3
Query: 255 AKSPFSVNSIFCLTSRERCLMNLKRAKVPKFGSTPTATAAVLVPLCRVAEVPSLLYTV-- 428
+ P+ S F L S + + ++ K GS T + C+ +P Y +
Sbjct: 1385 SSQPYPERSCFELPSSKGIVFSI--VNEGKTGSFLEVTKSSSSSSCQEVSMPQTQYEIYF 1442
Query: 429 ------RSSNLRTNSGQISFPGGKTDKNETPIE---TALRETDEEIGLSAKEIDVWGHG- 578
+ ++R+ S +I G DK ET + T L G+SA + G G
Sbjct: 1443 TRKNTDKVKHVRSFSDRIHVENGILDK-ETDYDVTVTWLNRYSPASGVSASKSFRTGFGY 1501
Query: 579 PAVPGRNNKIMITPVIGTIFNFKPESLNINVKEV 680
P+ P + I +TP ++ PE+LN + E+
Sbjct: 1502 PSAPRDPHAIPVTPDTVYLYWNLPETLNAPISEI 1535
>U64855-2|AAB04981.2| 1080|Caenorhabditis elegans Importin beta
family protein 4,isoform a protein.
Length = 1080
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/47 (25%), Positives = 26/47 (55%)
Frame = -3
Query: 362 CWCTSELWNLSPF*IHQTSFSGRETKYAVDTKRRLSTHFIQKVTCTV 222
CW T+EL+ + PF I ++ G ++ +R+L ++ ++ T+
Sbjct: 385 CWLTAELYRICPF-IQPSTLYGMMSQVREHPRRQLYREYLSQLRSTM 430
>AF098989-2|AAK18954.3| 346|Caenorhabditis elegans Hypothetical
protein F47G6.3 protein.
Length = 346
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +3
Query: 480 KTDKNETPIETALRETDEEIGLSAKEIDVWGHG--PAVPGRNNKIM 611
KT++ TP+ T+ T G +K+ D G P VPG+N+K M
Sbjct: 94 KTNQTSTPVPTSKDST----GSKSKKSDEVGRALTPGVPGKNSKAM 135
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,790,636
Number of Sequences: 27780
Number of extensions: 335790
Number of successful extensions: 834
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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